Identifying de novo mutations causing OCD in trios by whole exome sequencing

通过全外显子组测序识别三人组中引起强迫症的从头突变

• 批准号: 8870438
• 负责人: David B. Goldstein
• 金额: $ 88.84万
• 依托单位: COLUMBIA UNIVERSITY HEALTH SCIENCES
• 依托单位国家: 美国
• 财政年份: 2013
• 资助国家: 美国
• 起止时间: 2013-09-01 至 2018-04-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8870438
• 关键词: Affect; Architecture; Behavior; Behavior Therapy; Categories; Characteristics; Child; Chronic; Clinical; Complement; Complex; Disease; Family; Family member; Functional disorder; General Population; Genes; Genetic; Genetic study; Genome; Genotype; Heterozygote; Homozygote; Human; Human Genome; Inherited; Medical; Mental disorders; Methods; Modeling; Mutation; Nuclear Family; Obsession; Obsessive-Compulsive Disorder; Parents; Pathway interactions; Patient Care; Patients; Pharmaceutical Preparations; Phenotype; Prevalence; Relative (related person); Risk; Risk Factors; Siblings; Subgroup; Symptoms; Testing; Therapeutic; Thinking; Tic disorder; Untranslated RNA; Variant; base; case control; compulsion; design; effective therapy; exome; exome sequencing; expectation; falls; genetic pedigree; genetic variant; genome sequencing; interest; neuropsychiatry; next generation sequencing; offspring; public health relevance; rare variant; success; trait; transmission process

DESCRIPTION (provided by applicant): The wealth of information provided by whole-exome and whole-genome sequencing studies can make it difficult to identify variants that cause disease. Family sequencing, in particular the sequencing of trios and quartets with affected children and unaffected parents, allows one to exclude most of the rare variants present in the genome and focus on those few that are de novo or rare and homozygous only in the offspring. There is growing recognition that this is a productive approach in the study of complex diseases. Here, we propose to perform whole exome sequencing in families to identify genetic variants predisposing to obsessive-compulsive disorder (OCD). OCD is among the 10 most disabling medical conditions worldwide and involves persistent, intrusive, senseless thoughts and impulses (obsessions) and repetitive, intentional behaviors (compulsions). The lifetime prevalence of OCD is estimated at 1-3%. Although medication and behavioral therapy, available since the late 1980s, are useful, they control symptoms with only limited success, and the course of the condition remains chronic in most cases; cure is rare. It is therefore critical to understand the pathophysiology of OCD so we can ultimately develop effective treatments. We propose to sequence the exomes of 375 simplex OCD trios and 100 OCD quartets comprising affected sibs and unaffected parents. In the trios, we will identify de novo variants that are annotated as functional. Even if de novo variants are found to explain only a small proportion of OCD cases, their discovery will provide a substantial advance in understanding the pathophysiology of the disorder. Furthermore, we will analyze the distribution of de novo variants found in the trios, comparing this distribution to that expected in the general population and that found in trios from other psychiatric diseases. In the quartets as well as the trios, we will identify causal variants that are homozygous or compound heterozygous in the offspring but heterozygous in the parents. We will identify candidate variants falling into these categories and will prioritize them based upon functional annotation, rarity and overlap of implicated genes between unrelated families. We will then confirm these variants by genotyping them in unaffected family members. Finally, we will identify genotype-phenotype correlations by looking for characteristics that are shared between unrelated cases with causal variants in the same gene and also by looking for genetic similarities within clearly defined clinical subgroups of patients, such as those with tic disorders.

描述（由申请人提供）：全外显子组和全基因组测序研究提供的丰富信息可能使识别导致疾病的变异变得困难。家庭测序，特别是对患病儿童和未患病父母的三胞胎和四胞胎进行测序，可以排除基因组中存在的大多数罕见变异，并将重点放在那些仅在后代中新生或罕见且纯合子的少数变异上。越来越多的人认识到，这是研究复杂疾病的一种有效方法。在这里，我们建议在家庭中进行全外显子组测序，以确定易患强迫症（OCD）的遗传变异。强迫症是世界上十大最致残的疾病之一，包括持续的、侵入性的、毫无意义的想法和冲动（强迫）以及重复的、故意的行为（强迫）。强迫症的终生患病率估计为1-3%。自20世纪80年代末以来，药物治疗和行为治疗是有用的，但它们控制症状的效果有限，而且在大多数情况下，这种疾病的病程仍然是慢性的；治愈是罕见的。因此，了解强迫症的病理生理学是至关重要的，这样我们才能最终开发出有效的治疗方法。我们建议对375个单纯性强迫症三重奏组和100个强迫症四重奏组（包括受影响的兄弟姐妹和未受影响的父母）的外显子组进行测序。在这三组中，我们将识别被注释为功能的从头变体。即使发现新生变异只能解释一小部分强迫症病例，他们的发现将为理解这种疾病的病理生理学提供实质性的进展。此外，我们将分析在三人组中发现的新生变异的分布，并将这种分布与一般人群的预期分布进行比较