Ribosome Dysfunction in Neurological Disorders

神经系统疾病中的核糖体功能障碍

• 批准号: 9006366
• 负责人: SUSAN L ACKERMAN
• 金额: $ 4.61万
• 依托单位: JACKSON LABORATORY
• 依托单位国家: 美国
• 财政年份: 2015
• 资助国家: 美国
• 起止时间: 2015-09-01 至 2016-02-29
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/9006366
• 关键词: Address; Affect; Age; Aging; Amino Acids; Arginine; Ataxia; Bacteria; Brain; Cell Death; Cerebellar degeneration; Cerebellum; Cessation of life; Codon Nucleotides; Complement; Complex; Computer Simulation; Computing Methodologies; Critical Pathways; Data; Defect; Development; Disease; Economic Burden; Event; Failure; Functional disorder; Genes; Genetic; Genetic Translation; Genomics; Growth; Guanosine Triphosphate Phosphohydrolases; Hereditary Disease; Hippocampus (Brain); Homeostasis; Human Genetics; Lead; Location; Mammalian Cell; Mammals; Messenger RNA; Modeling; Molecular; Mouse Strains; Mus; Mutant Strains Mice; Mutation; Nerve Degeneration; Neurodegenerative Disorders; Neurons; Organ; Pathology; Pathway interactions; Peptides; Positioning Attribute; Process; Protein Biosynthesis; Proteins; Recycling; Regulation; Research; Resolution; Ribosomes; Specificity; Speed; Staging; Structure; System; TP53 gene; Terminator Codon; Testing; Transfer RNA; Transfer RNA Aminoacylation; Translating; Translation Process; Translations; United States; Work; Yeasts; age effect; aged; aging brain; aging population; genetic approach; genetic information; granule cell; human disease; mouse model; nervous system disorder; neuron loss; novel; paralogous gene; public health relevance; release factor; research study; retinal neuron; simulation; transcriptome sequencing; transmission process

 DESCRIPTION (provided by applicant): Neurodegenerative disorders affect many millions of people around the world, particularly in the aging population. The vast majority of these diseases are not familial and the mutations that have been associated with rare familial forms of these disorders underscore the complexity of this group of diseases. To begin to understand this complexity, we have used forward genetic approaches to pinpoint the molecular pathways that maintain neuronal homeostasis in the aging mammalian brain. Using this approach we recently demonstrated that unresolved ribosome stalling is a novel mechanism for neurodegeneration. Despite the fundamental importance of translation, the cellular consequences of ribosome stalling in mammalian cells had been unknown until our discovery that a mutation in a novel mammalian ribosome rescue factor Gtpbp2 causes ataxia and degeneration of cerebellar granule cells, cortical and hippocampal neurons, and multiple retinal neurons. Importantly we demonstrated that loss of Gtpbp2 epistatically interacts with a mutation in a CNS- specific, cytoplasmic tRNAArgUCU in the widely used C57BL6/J (B6J) mouse strain to cause neurodegeneration. Our ribosome footprinting experiments revealed that loss of this tRNA led to low levels of ribosome stalling at Arginine AGA codons that was not associated with neurodegeneration. However, stalling was dramatically increased in the absence of Gtpbp2, demonstrating that this protein normally resolves ribosomal stalls. In this application we propose to determine the function of these and other ribosome rescue factors in neuron survival, the impact of increasing age on ribosome stalling in the brain, and additional molecular mechanisms which cause ribosome stalling in mammalian neurons. In Aim 1 we will determine the effects of loss of the ribosome rescue factors Gtpbp1, Hbs1l, and Pelo with- and without- tRNA deficiency. These studies will be complemented by novel computational methods to infer ribosomal locations at increased precision and ascertain mechanisms that distinguish strains using parameter-dependent simulations of the translation process. In Aim 2 we will determine the effects of aging on ribosome stalling and neurodegeneration in the brains of aged wild type and ribosome rescue mutant mice without the tRNA mutation and generate and analyze ribosome footprinting and RNA-Seq data from cerebella of aged mice. In Aim 3 we will investigate pathways that lead to cell death and determine their uniqueness for neurons. We will determine if deficiency of ubiquitously expressed tRNAs induces ribosome stalling and pathology in other organs, analyze the effects of the GCN2/ATF4 and P53 pathways on neurodegeneration, and identify additional modifier genes of neurodegeneration in Gtpbp2-/- mice. Together, we expect these studies to reveal the mechanisms by which dysregulation of translation elongation leads to cellular death and their specificity for neurodegenerative disease.

 描述（由申请人提供）：神经退行性疾病影响世界各地数百万人，特别是老年人。这些疾病中的绝大多数不是家族性的，并且与这些疾病的罕见家族形式相关的突变强调了这组疾病的复杂性。为了开始理解这种复杂性，我们使用正向遗传方法来确定衰老哺乳动物大脑中维持神经元稳态的分子途径。使用这种方法，我们最近证明了未解决的核糖体停滞是神经变性的一种新机制。尽管翻译具有根本的重要性，但哺乳动物细胞中核糖体停滞的细胞后果一直是未知的，直到我们发现一种新型哺乳动物核糖体拯救因子Gtpbp 2的突变导致小脑颗粒细胞、皮质和海马神经元以及多个视网膜神经元的共济失调和变性。重要的是，我们证明了Gtpbp 2的缺失与广泛使用的C57 BL 6/J（B6 J）小鼠品系中CNS特异性细胞质tRNAArgUCU中的突变发生上位性相互作用，从而引起神经变性。我们的核糖体足迹实验显示，这种tRNA的丢失导致低水平的核糖体停滞在精氨酸阿加密码子上，这与神经变性无关。然而，在Gtpbp 2不存在的情况下，停滞显著增加，表明该蛋白通常解决核糖体停滞。在本申请中，我们建议确定这些和其他核糖体拯救因子在神经元存活中的功能，年龄增加对核糖体停滞在大脑中的影响，以及导致哺乳动物神经元中核糖体停滞的其他分子机制。在目标1中，我们将确定在tRNA缺乏和不缺乏的情况下核糖体拯救因子Gtpbp 1、Hbs 1 l和Pelo丧失的影响。这些研究将得到新的计算方法的补充，以更高的精度推断核糖体位置，并确定使用翻译过程的参数依赖性模拟来区分菌株的机制。在目标2中，我们将确定衰老对老年野生型和无tRNA突变的核糖体拯救突变小鼠脑中核糖体停滞和神经变性的影响，并生成和分析老年小鼠小脑的核糖体足迹和RNA-Seq数据。在目标3中，我们将研究导致细胞死亡的途径，并确定它们对神经元的独特性。我们将确定普遍表达的tRNA的缺乏是否会诱导其他器官的核糖体停滞和病理学，分析GCN 2/ATF 4和P53通路对神经变性的影响，并确定Gtpbp 2-/-小鼠神经变性的其他修饰基因。总之，我们希望这些研究能够揭示翻译延长失调导致细胞死亡的机制及其对神经退行性疾病的特异性。