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Extending Chemical Synthesis to Ion Channels and Transporters

将化学合成扩展到离子通道和转运蛋白

基本信息

批准号：
8921212
负责人：
Francis Valiyaveetil
金额：
$ 30.8万
依托单位：
OREGON HEALTH & SCIENCE UNIVERSITY
依托单位国家：
美国
项目类别：
财政年份：
2009
资助国家：
美国
起止时间：
2009-05-01 至 2018-08-31
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/8921212
关键词：
Action Potentials Address Alzheimer&apos s Disease Amino Acids Amyotrophic Lateral Sclerosis Aspartate Binding Binding Sites Biological Process Biology Cells Coupled Coupling Electrophysiology (science)Family Functional disorder Glutamate Transporter Glutamates Goals Grant Health Homologous Gene Human Integral Membrane Protein Investigation Ion Channel Ions Knowledge Lead Light Link Mediating Methodology Methods Modification Molecular Conformation Neurons Oxygen Physiology Play Post-Translational Protein Processing Potassium Channel Process Protein Family Proteins Research Role Site Site-Directed Mutagenesis Structure Techniques Vertebral column Work X-Ray Crystallography cardiac pacing chemical synthesis electrical property human disease insight interdisciplinary approach member nervous system disorder novel strategies protein structure protein structure function tool uptake

项目摘要

DESCRIPTION (provided by applicant): Ion channels and transporters are integral membrane proteins that play important roles in virtually all aspects of human physiology. Understanding the inner workings of these proteins is important, as dysfunctions of ion channels and transporters lead to human diseases. In this proposal, we use a novel approach, chemical synthesis, to investigate these proteins. Chemical synthesis is a powerful method for protein modification because it allows the incorporation of a wide variety of unnatural amino acids and protein backbone modifications for precise changes in the protein. In this application, we use the chemical synthesis of the K+ channels, KcsA and KvAP, to investigate the mechanism of slow inactivation. Slow inactivation is a conformational change at the selectivity filter of K+ channels that converts it from a conductive to a non- conductive state. Slow inactivation plays a crucial role in determining the electrical properties of an excitable cell. We will address the following unresolved issues regarding slow inactivation: i) What is the conformation of the selectivity filte in the slow inactivated state? ii) How do permeant ions modulate slow inactivation? and iii) Do similar conformational changes at the selectivity filter underlie slow inactivation in different K+ channels? We will employ a multidisciplinary approach for these investigations that combines chemical synthesis with electrophysiology and structural studies using X-ray crystallography. We also propose to extend chemical synthesis to transporters by carrying out the synthesis of GltPH, an archaeal homolog of eukaryotic glutamate transporters. Glutamate transporters mediate the concentrative uptake of glutamate by harnessing the energy from the electrochemical gradient of ions. Dysfunction of glutamate transporters has been implicated in neurological diseases such as Alzheimer's and amyotrophic lateral sclerosis (ALS). A central unanswered question in glutamate transporters is the mechanism by which the electrochemical gradients of the ions are coupled to the uptake of glutamate. Here we use chemical synthesis of GltPH to unravel the mechanism of Na+ coupled transport. The research proposed is significant because it will provide deeper mechanistic insights into the physiologically important processes of slow inactivation in K+ channels and Na+ coupled transport. Further, this research will establish the methodology of chemical synthesis for investigating integral membrane proteins.

描述（由申请人提供）：离子通道和转运蛋白是在人体生理学的几乎所有方面发挥重要作用的膜蛋白。了解这些蛋白质的内部运作是很重要的，因为离子通道和转运蛋白的功能障碍会导致人类疾病。在这个提议中，我们使用一种新的方法，化学合成，来研究这些蛋白质。化学合成是一种强大的蛋白质修饰方法，因为它允许掺入各种各样的非天然氨基酸和蛋白质骨架修饰，以实现蛋白质的精确变化。在本申请中，我们使用K+通道KcsA和KvAP的化学合成来研究缓慢失活的机制。慢失活是钾通道选择性过滤器的构象变化将其从导电状态转换为非导电状态。慢失活在确定可兴奋细胞的电特性中起着至关重要的作用。我们将解决以下关于缓慢失活的未解决的问题：i）在缓慢失活状态下选择性过滤器的构象是什么？ii）渗透离子如何调节缓慢失活？和iii）在不同K+浓度下，选择性过滤器上类似的构象变化是否是缓慢失活的基础？渠道？我们将采用多学科的方法进行这些研究，将化学合成与电生理学和使用X射线晶体学的结构研究相结合。我们还建议通过合成GltPH（真核谷氨酸转运蛋白的古生物同系物）将化学合成扩展到转运蛋白。谷氨酸转运蛋白通过利用来自离子的电化学梯度的能量来介导谷氨酸的集中摄取。谷氨酸转运蛋白的功能障碍与神经系统疾病如阿尔茨海默病和肌萎缩侧索硬化症（ALS）有关。谷氨酸转运蛋白的一个中心未回答的问题是离子的电化学梯度与谷氨酸摄取耦合的机制。在这里，我们使用化学合成的GltPH来解开Na+耦合运输的机制。该研究具有重要意义，因为它将为K+通道和Na+耦合转运的缓慢失活过程提供更深入的生理机制见解。此外，本研究将建立化学合成的方法来研究膜整合蛋白。