Genomic Approaches to Deciphering Memory Circuits

破译记忆回路的基因组方法

• 批准号: 9128063
• 负责人: JINGYUE JU
• 金额: $ 39.69万
• 依托单位: COLUMBIA UNIV NEW YORK MORNINGSIDE
• 依托单位国家: 美国
• 财政年份: 2012
• 资助国家: 美国
• 起止时间: 2012-09-10 至 2017-08-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/9128063
• 关键词: Address; Afferent Neurons; Animal Model; Animals; Antibodies; Aplysia; Attention; Behavior; Bioinformatics; Biology; Biomedical Engineering; Biomedical Research; Brain; Cell Culture System; Cell Culture Techniques; Cell Polarity; Cell physiology; Cells; Characteristics; Coculture Techniques; Communication; Complement; Distal; Distant; FMRFamide; Fright; Future; Gene Expression; Gene Expression Profile; Gene Expression Regulation; Genes; Genomic approach; Genomics; Gills; Goals; Growth Cones; Human; In Vitro; Individual; Interneurons; Investigation; Learning; Maintenance; Memory; Memory Loss; Mental Depression; Messenger RNA; Methodology; MicroRNAs; Microdissection; Modality; Modeling; Molecular; Motor Neurons; Nerve; Neurites; Neurodegenerative Disorders; Neuronal Plasticity; Neurons; Neurosciences; Pathway interactions; Pattern; Peripheral; Physiological; Polyadenylation; Presynaptic Terminals; Process; Property; Proteins; RNA; RNA Interference; Reflex action; Regulator Genes; Research; Resolution; Role; Sensory; Serotonin; Signal Transduction; Site; Small RNA; Synapses; System; Systems Analysis; Systems Biology; Technology; Testing; Time; Transcript; Translations; Ursidae Family; Withdrawal; base; cell type; cost; deep sequencing; expectation; experience; functional genomics; gene product; interest; laser tweezer; learned behavior; long term memory; member; nervous system disorder; neural circuit; neuronal circuitry; neuronal growth; next generation sequencing; polarized cell; postsynaptic neurons; protein distribution; reconstitution; response; sequencing platform; success; synaptic function; transcriptome; transcriptome sequencing; transcriptomics

DESCRIPTION (provided by applicant): The objective of the proposed research is to conduct a thorough single-cell and cell-compartment gene expression study through the application of high throughput genomic technologies to identify the genomic bases of neuronal identity, polarity and plasticity. Utilizing the well-studied gill withdrawal reflex memory circuit from the model organism Aplysia californica, our goal is to define systematically the molecular repertoire (genomic blueprint) of the neurites and individual synapses of the key neurons that make up this cellular ensemble. We will define the compartmental transcriptomes (the sets of mRNAs, miRNAs and other ncRNAs) within the components of the functional circuit (cells and synapses), which are reconstituted in vitro by co- culture of 2-4 of its best characterized cells (L7 motor neuron, sensory neuron, stimulatory and inhibitory interneurons). This fully operational neural circuit reconstructed in cell culture bears many important properties of the intact circuit, and has been used with great success to ascertain the molecular underpinnings of memory formation in Aplysia, numerous aspects of which are conserved within the animal kingdom, including in the human brain. The systems biology approach will be applied to reveal gene regulatory networks and their potential role in the establishment and maintenance of long-term memory using learned fear as an experimental paradigm, focusing on synaptic mechanisms of long-term facilitation (LTF) and depression (LTD). We will use this genomic and systems biology approach to explore the following three fundamental brain mechanisms: (1) the molecular basis of neuronal identity, by revealing those transcripts that are unique to or shared among these neurons or specialized synapses; (2) the molecular signals controlling cellular polarity and the formation of the precise pattern of interconnections which underlie behavior, in part directed by the distribution of mRNAs in the central and peripheral compartments of these cells; and (3) the molecular basis of synapse-specific neuronal plasticity and neuronal growth, with special attention paid to the mRNA repertoire within the individual synapses at the junctions between pairs of pre- and post-synaptic neurons. The combined approach will take advantage of an already established team of experts in genomics, bioengineering, neuroscience, and bioinformatics. Though these paradigms will be established in the large well-characterized neurons of Aplysia, the mechanisms revealed and the technologies developed will have a broad impact in the biology of any polarized cell type with asymmetric distribution of RNAs and proteins.

描述（由申请人提供）：拟议研究的目的是通过应用高通量基因组技术来进行彻底的单细胞和细胞区室基因表达研究，以确定神经元身份、极性和可塑性的基因组基础。利用来自模型生物海兔的经过充分研究的鳃缩回反射记忆回路，我们的目标是系统地定义构成该细胞群的关键神经元的神经突和单个突触的分子库（基因组蓝图）。我们将定义功能回路组件（细胞和突触）内的区室转录组（mRNA、miRNA 和其他 ncRNA 的集合），这些转录组是通过共培养 2-4 个最具有特征的细胞（L7 运动神经元、感觉神经元、刺激性和抑制性中间神经元）在体外重建的。这种在细胞培养物中重建的完全运作的神经回路具有完整回路的许多重要特性，并已被成功地用于确定海兔记忆形成的分子基础，其中许多方面在动物界（包括人脑）中是保守的。系统生物学方法将用于揭示基因调控网络及其在建立和维持长期记忆中的潜在作用，使用习得性恐惧作为实验范式，重点关注长期促进（LTF）和抑郁（LTD）的突触机制。我们将使用这种基因组和系统生物学方法来探索以下三种基本的大脑机制：（1）神经元身份的分子基础，通过揭示这些神经元或专门突触所独有或共享的转录本； (2) 控制细胞极性的分子信号和构成行为基础的精确互连模式的形成，部分是由这些细胞的中央和外周区室中 mRNA 的分布所指导的； (3) 突触特异性神经元可塑性和神经元生长的分子基础，特别关注突触前和突触后神经元对之间连接处的单个突触内的 mRNA 库。这种组合方法将利用基因组学、生物工程、神经科学和生物信息学领域已经建立的专家团队。尽管这些范式将在海兔的大型特征明确的神经元中建立，但所揭示的机制和开发的技术将对任何具有 RNA 和蛋白质不对称分布的极化细胞类型的生物学产生广泛的影响。