Consequences of IFIT Gene Evolution on Species-Specific Antiviral Immunity

IFIT 基因进化对物种特异性抗病毒免疫的影响

• 批准号: 9272360
• 负责人: Matthew Daugherty
• 金额: $ 10.8万
• 依托单位: UNIVERSITY OF CALIFORNIA, SAN DIEGO
• 依托单位国家: 美国
• 财政年份: 2016
• 资助国家: 美国
• 起止时间: 2016-05-12 至 2018-04-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/9272360
• 关键词: Affect; Antiviral Agents; Binding; Biochemistry; Biological Assay; Cell Line; Complement; Data; Development; Evolution; Family; Foundations; Funding; Future; Gene Family; Gene Targeting; Genes; Genetic; Genetic Translation; Genetic Variation; Goals; HIV; Human; Immune system; Immunity; In Vitro; Individual; Influenza; Innate Immune System; Integration Host Factors; Interferons; Lead; Light; Mammals; Messenger RNA; Methylation; Modeling; Molecular; Mus; Names; Natural Immunity; Nucleotides; Phylogenetic Analysis; Predisposition; Primates; Property; Proteins; Race; Recording of previous events; Research; Research Project Grants; Resistance; Severe Acute Respiratory Syndrome; Smallpox; Specificity; Structure; System; Testing; Therapeutic; Translations; Vaccinia virus; Vesicular stomatitis Indiana virus; Viral; Virus; Virus Diseases; Virus Replication; Yeasts; Zoonoses; antiviral immunity; arm; genetic signature; insight; interdisciplinary approach; mRNA capping; mammalian genome; member; molecular recognition; mutant; novel; pandemic disease; paralogous gene; prevent; programs; public health relevance; response; success; transmission process; viral transmission; virology; yeast genetics

 DESCRIPTION (provided by applicant): Some of the most deadly human viral infections are the result of zoonoses from other species. This makes identification of host factors that define human susceptibility to viruses currently circulating in other species an essential part of efforts to prevent and cure zoonotic infections. Host factors known to restrict cross-species transmission are some of the most rapidly evolving factors in mammalian genomes, often as a result of evolutionary 'arms races' with viruses. My research focuses uses these evolutionary signatures of gene adaptation to discover and characterize new mechanisms of innate immunity and determine how genetic variation in host immunity impacts viral transmission. My proposal focuses on the IFIT (Interferon-induced with tetratricopeptide repeat) gene family, some of the most highly upregulated genes in response to viral infection. I have found that IFITs are also among the most rapidly evolving genes in mammals, leading me to hypothesize that inter-species difference in IFIT gene repertoire and sequence will influence the success of viral transmission between species. My lab will test these hypotheses using a multidisciplinary approach that integrates insights from biochemistry, evolutionary genetics, and virology. In Aim 1, we will examine how IFIT1 evolution, both in sequence and due to gene gain and loss, influences the viruses that different hosts can restrict. In Aim 2, I will determine how a human IFIT1 functions to restrict viral replication. These studies will not only shed light on the mechanistic consequences of IFIT evolution, but will also identify species-specific changes in innate antiviral immunity. Finally, more broadly, my research will highlight the power of using an evolution-guided approach to discover and characterize factors important for cross-species viral transmission.

 描述（由申请人提供）：一些最致命的人类病毒感染是其他物种的人畜共患病的结果。这使得确定确定人类对目前在其他物种中传播的病毒的易感性的宿主因素成为努力的重要组成部分 预防和治疗人畜共患传染病。已知限制跨物种传播的宿主因素是哺乳动物基因组中进化最快的一些因素，通常是与病毒进化“军备竞赛”的结果。我的研究重点是使用这些基因适应的进化特征来发现和表征先天免疫的新机制，并确定宿主免疫中的遗传变异如何影响病毒传播。我的建议集中在IFIT（干扰素诱导与tetratricopeptide repeat）基因家族，一些最高度上调的基因在病毒感染的反应。我发现IFIT也是哺乳动物中进化最快的基因之一，这使我假设IFIT基因库和序列的种间差异将影响种间病毒传播的成功。我的实验室将使用多学科方法来测试这些假设，该方法整合了生物化学，进化遗传学和病毒学的见解。在目标1中，我们将研究IFIT1的进化，无论是在序列上还是由于基因的获得和丢失，如何影响不同宿主可以限制的病毒。在目标2中，我将确定人类IFIT1如何发挥作用以限制病毒复制。这些研究不仅将阐明IFIT进化的机制后果，而且还将确定先天抗病毒免疫的物种特异性变化。最后，更广泛地说，我的研究将突出使用进化引导的方法来发现和表征跨物种病毒传播的重要因素的力量。