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Repair of Damaged Chromosomes Mediated by the Bacterial RecN Protein

细菌 RecN 蛋白介导的受损染色体修复

基本信息

批准号：
9279171
负责人：
SHELLEY LUSETTI
金额：
$ 26.28万
依托单位：
NEW MEXICO STATE UNIVERSITY LAS CRUCES
依托单位国家：
美国
项目类别：
财政年份：
2013
资助国家：
美国
起止时间：
2013-07-05 至 2022-04-30
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/9279171
关键词：
ATP Hydrolysis ATP phosphohydrolase Affinity Bacteria Bacterial Genome Binding Biochemical Biochemistry Biological Biophysics Catalysis Chromosomal Instability Chromosomal Rearrangement Chromosome Deletion Chromosomes Congenital Abnormality DNA DNA Binding DNA Double Strand Break DNA Repair DNA Repair Pathway DNA-dependent ATPase Data Double Strand Break Repair Genetic Genetic Recombination Genetic Screening Genome Goals Housekeeping Hydrolysis In Vitro Investigation Kinetics Lead Maintenance Malignant Neoplasms Mediating Metabolism Modeling Molecular Molecular Conformation Mutation Nucleotides Organism Orthologous Gene Pathway interactions Physical condensation Pilot Projects Play Point Mutation Positioning Attribute Premature aging syndrome Process Property Protein Family Proteins Reaction Rec A Recombinases Research Proposals Role Sister Chromatid Substrate Specificity Tumor Suppressor Proteins Work biophysical properties cohesin cohesion ds-DNA in vitro activity in vivo member mutant nucleotide analog public health relevance recombinase recombinational repair reconstitution repaired

项目摘要

DESCRIPTION (provided by applicant): The overall goal of this research proposal is to reveal the molecular function of RecN, a protein critical to the repair of DNA double-stranded breaks (DSBs) in bacteria. Bacterial RecN proteins share significant homology to the Structural Maintenance of Chromosomes (SMC) family of proteins. Eukaryotic SMC proteins have essential (although not fully understood) housekeeping and tumor suppressor roles in a variety of DNA metabolic processes such as chromosomal condensation, sister chromatid cohesion and recombinational DNA repair. Although extensive genetic evidence underscores the importance of RecN proteins to bacterial genome maintenance, there has been little substantive biochemical investigation into their function and, consequently, the specific reactions requiring RecN have not been identified. We have successfully identified several in vitro activities mediated by the RecN protein including a cohesin function and the stimulation of recombination. We are now positioned to decipher mechanistic details of RecN function in recombinational DNA repair pathways, utilizing a combination of biochemical, biophysical and biological approaches. This project has three specific aims. First, we will further characterize the biochemical and biophysical properties of the RecN protein related to substrate binding and catalysis. Next, we will determine the role of RecN in mediating recombinational repair by using both in vitro pathway reconstitution and genetic screens. And, finally, we will determine the contribution of multiple sequence motifs conserved in all bacterial RecN proteins and shared by eukaryotic SMC orthologs. We anticipate that the results from this work will provide valuable models for understanding the molecular role that eukaryotic SMC proteins play in genome maintenance.

描述(由申请人提供)：这项研究提案的总体目标是揭示RecN的分子功能，RecN是一种对细菌DNA双链断裂(DSB)修复至关重要的蛋白质。细菌RecN蛋白与染色体结构维持蛋白(SMC)家族有显著的同源性。真核SMC蛋白在染色体凝聚、姐妹染色单体凝聚和重组DNA修复等多种DNA代谢过程中具有重要的管家作用和肿瘤抑制作用。尽管广泛的遗传学证据强调了RecN蛋白对细菌基因组维持的重要性，但对其功能的实质性生化研究很少，因此，需要RecN的特定反应尚未确定。我们已经成功地鉴定了几种由RecN蛋白介导的体外活性，包括粘附素功能和刺激重组。我们现在可以利用生化、生物物理和生物学的组合方法，破译重组DNA修复途径中RecN功能的机械细节。这个项目有三个具体目标。首先，我们将进一步表征RecN蛋白与底物结合和催化相关的生化和生物物理性质。接下来，我们将通过体外途径重建和遗传筛选来确定RecN在介导重组修复中的作用。最后，我们将确定在所有细菌RecN蛋白中保守的并被真核SMC同源物共享的多个序列基序的贡献。我们期望这项工作的结果将为理解真核SMC蛋白在基因组维持中所起的分子作用提供有价值的模型。