Regulation of Chromatin Structure Dynamics in Hematopoietic and Leukemic Stem Cel

造血干细胞和白血病干细胞染色质结构动态的调控

• 批准号: 9100848
• 负责人: CAMILLA FORSBERG
• 金额: $ 44.22万
• 依托单位: UNIVERSITY OF CALIFORNIA SANTA CRUZ
• 依托单位国家: 美国
• 财政年份: 2013
• 资助国家: 美国
• 起止时间: 2013-08-01 至 2018-05-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/9100848
• 关键词: Affect; Amaze; Architecture; Biological Assay; Blood; Cell Count; Cell physiology; Cells; Chromatin; Chromatin Structure; Competence; DNA; DNA Sequence Alteration; Decision Making; Development; Disease; Enzymes; Epigenetic Process; Gene Activation; Gene Expression; Gene Silencing; Genes; Goals; Health; Hematological Disease; Hematopoiesis; Hematopoietic; Hematopoietic stem cells; Heterochromatin; Histones; Imaging Techniques; Immune system; In Vitro; Link; Location; Maps; Measures; Modeling; Modification; Molecular; Multipotent Stem Cells; Myeloproliferative disease; Oncogenic; Outcome; Physical condensation; Prevention; Proteins; Regulation; Research; Resolution; Role; Side; Stem cells; System; Testing; adult stem cell; cancer therapy; cell transformation; chromatin modification; chromatin remodeling; comparative; epigenetic regulation; epigenome; functional outcomes; gene repression; genome-wide; hematopoietic stem cell fate; histone demethylase; histone methylation; histone methyltransferase; histone modification; improved; in vitro Assay; in vivo; insight; leukemia; leukemic stem cell; leukemogenesis; multipotent cell; novel; novel strategies; nuclease; progenitor; reconstitution; research study; small molecule; stem; stem cell differentiation; stem cell fate; transcription factor

DESCRIPTION (provided by applicant): Our long-term research goals are to understand the mechanisms that regulate stem cell fate decisions. This proposal focuses on epigenetic regulation of cell identity. Open chromatin has been proposed as one of the hallmarks of stem cells, explaining their multilineage potential. Using the hematopoietic stem cell (HSC) system as a model of adult stem cell differentiation, we propose to test whether HSC have a more open and dynamic chromatin structure than lineage committed progenitors and mature cells. In addition, we will test the functional consequences of chromatin condensation, and manipulate heterochromatin formation during HSC differentiation. Importantly, we have discovered that highly purified hematopoietic stem and progenitor cells have a more nuclease-sensitive chromatin structure compared to mature cells. This nuclease sensitivity correlates with linage potential and with differential three-dimensional chromatin organization. Here, we will investigate the mechanisms behind these differences. We will analyze the global molecular changes of DNA and histone proteins by sensitive assays capable of detecting differences in small numbers of cells. We will test how HSC differentiation and fate decisions change upon inhibition of chromatin modifying enzymes using a combination of complementary molecular, cellular, and functional assays in vitro and in vivo. Lastly, we will perform comparative chromatin analyses between HSC and leukemic stem cells and assess the contribution of chromatin modifications in leukemic transformation. We anticipate that these results will provide novel insights to the dynamics of chromatin structure and organization during stem cell differentiation and transformation, with important implications for both normal hematopoietic development and leukemogenesis.

描述(由申请者提供)：我们的长期研究目标是了解调节干细胞命运决定的机制。这项建议侧重于细胞身份的表观遗传调控。开放染色质被认为是干细胞的标志之一，解释了它们的多谱系潜力。利用造血干细胞(HSC)系统作为成体干细胞分化的模型，我们建议测试HSC是否具有比祖细胞和成熟细胞更开放和更动态的染色质结构。此外，我们将测试染色质凝聚的功能后果，并在HSC分化过程中操纵异染色质的形成。重要的是，我们发现与成熟细胞相比，高纯度的造血干细胞和祖细胞具有更多的核酸酶敏感的染色质结构。这种核酸酶的敏感性与连接潜力和不同的三维染色质结构有关。在这里，我们将调查这些差异背后的机制。我们将通过敏感的方法分析DNA和组蛋白蛋白的全球分子变化，这些方法能够检测少数细胞的差异。我们将在体外和体内使用互补的分子、细胞和功能分析相结合的方法，测试抑制染色质修饰酶后HSC的分化和命运决定是如何改变的。最后，我们将进行比较染色质 分析HSC和白血病干细胞，并评估染色质修饰在白血病转化中的作用。我们预计这些结果将为干细胞分化和转化过程中染色质结构和组织的动态变化提供新的见解，并对正常造血发育和白血病发生具有重要意义。