Methods for serially multiplexed labeling in EM reconstructions of brain tissue

脑组织电镜重建中连续多重标记的方法

• 批准号: 9892040
• 负责人: LINNAEA E OSTROFF
• 金额: $ 24.15万
• 依托单位: UNIVERSITY OF CONNECTICUT STORRS
• 依托单位国家: 美国
• 财政年份: 2019
• 资助国家: 美国
• 起止时间: 2019-03-13 至 2022-02-28
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/9892040
• 关键词: Affect; Antibodies; Antigens; Array tomography; Brain; Cell physiology; Cells; Chemicals; Chemistry; Classification; Classification Scheme; Crosslinker; Data; Disease; Electron Microscopy; Elements; Fixatives; Gene Expression Profile; Gene Transfer Techniques; Genetic; Glutaral; Goals; Image; Impairment; Label; Light; Manuals; Maps; Measures; Membrane; Mental disorders; Methods; Molecular; Molecular Biology; Morphology; Neuronal Plasticity; Neurons; Neuropeptides; Neurosciences; Osmium; Pattern; Plant Resins; Preparation; Procedures; Proteins; Protocols documentation; RNA Probes; Reporter; Research; Sampling; Speed; Synapses; Taxonomy; Testing; Time; Tissue Preservation; Tissue Sample; Tissues; Transgenic Organisms; Variant; brain cell; brain tissue; brain volume; cell type; computerized data processing; connectome; crosslink; design; epon; fly; genetic manipulation; immunoreactivity; innovation; molecular marker; nervous system disorder; novel; novel strategies; preservation; receptor binding; reconstruction; sample fixation; small molecule; structured data; tissue preparation; tool

Project Summary/Abstract Tremendous technological progress in the use of serial electron microscopy (EM) for brain circuit mapping has been made over the last decade, and it is possible to directly visualize synaptic connectivity in larger volumes of brain tissue than ever before. Meanwhile, advances in molecular biology have shed new light on the diversity among neurons, particularly with respect to their patterns of gene expression. Currently, there are no methods available to efficiently integrate molecular labels into serial EM reconstructions. The ability to distinguish many molecular cell type markers in serial EM volumes would greatly enhance our ability to study circuit function, neuronal diversity, and neuroplasticity, and to determine how these are affected in disease states. The major barrier to visualizing molecules in serial EM is that the methods used to preserve morphology and generate contrast for serial EM are incompatible with most labels. Several methods have been developed to accommodate this limitation, mainly by using genetic tools to introduce labels before tissue samples are prepared for EM. These approaches are restrictive in that only a few labels can be used in a single sample, genetic manipulation is required, and endogenous molecules cannot be localized. This project will develop approaches that allow many different molecular labels to be differentiated within a single serial EM tissue volume. An innovative strategy will be used: instead of working around the standard serial EM protocol by designing labels that are compatible with it, the focus will be on replacing the incompatible elements of the standard protocol. Circuit reconstruction by serial EM requires a high degree of morphological preservation, which is typically accomplished with harsh chemicals that damage and denature molecules. However, all that is fundamentally required to preserve morphology is to retain as many molecules in the tissue as possible, which is also necessary for molecular labeling. Therefore, tissue preservation protocols will be developed to minimize extraction of molecules without damage or irreversible denaturation. A combination of strategies will be employed, including novel combinations of chemical crosslinkers and embedding resins. These new approaches will offer a means of revealing valuable information about circuit organization and neuronal diversity that is presently inaccessible.

项目总结/摘要 脑回路连续电子显微镜（EM）使用的巨大技术进步 在过去的十年中，已经进行了映射，并且可以直接可视化突触连接， 脑组织的体积比以往任何时候都大。与此同时，分子生物学的进步为我们带来了新的 了解神经元之间的多样性，特别是它们的基因表达模式。目前， 还没有有效地将分子标记整合到连续EM重建中的方法。的 在连续EM体积中区分许多分子细胞类型标记物的能力将大大提高我们的能力， 研究电路功能，神经元多样性和神经可塑性，并确定这些是如何影响， 疾病状态。在连续EM中可视化分子的主要障碍是用于保存的方法 连续EM的形态和生成对比度与大多数标记不兼容。有几种方法已 已经开发出适应这种限制，主要是通过使用遗传工具，在组织之前引入标签， 制备用于EM的样品。这些方法是限制性的，因为只有少数标签可以用于 单个样品，需要遗传操作，并且内源性分子不能被定位。这个项目 将开发的方法，使许多不同的分子标记区分在一个单一的系列EM 组织体积。将使用一种创新的策略：而不是围绕标准串行EM协议工作 通过设计与之兼容的标签，重点将放在替换 标准协议。通过串行EM的电路重建需要高度的形态保留， 这通常是用破坏和变性分子的刺激性化学品完成的。然而，这一切 从根本上说，保持形态的要求是在组织中保留尽可能多的分子， 这也是分子标记所必需的。因此，将制定组织保存方案， 最大限度地减少分子的提取，而不会造成损坏或不可逆的变性。一系列战略将 包括化学交联剂和包埋树脂的新型组合。这些新 方法将提供一种手段，揭示有价值的信息，电路组织和神经元 目前无法获得的多样性。