CHABMAP (Cyanobacterial Harmful Algal Bloom Mapping and Analyses Platform) technology automates the quantification of toxic CyanoHABs exposure epochs for any waterbody.
CHABMAP (Cyanobacterial Harmful Algal Bloom Mapping and Analyses Platform) technology automates the quantification of toxic CyanoHABs exposure epochs for any waterbody.
批准号:
9906581
负责人:
Nathan Torbick
金额:
$50.42万
依托单位国家:
美国
项目类别:
财政年份:
2016
资助国家:
美国
项目状态:
已结题
起止时间:
2016-01-15 至 2022-05-31
关键词:
AddressAlgaeAmyotrophic Lateral SclerosisArchivesBig DataCenters for Disease Control and Prevention (U.S.)ChlorophyllClinicColorCommunicationComputer softwareCustomCyanobacteriumDataDevelopmentEnvironmentEpidemiologyEtiologyFrequenciesGenesGeographyMachine LearningMeasurementMedical centerMolecular BiologyMonitorNeurodegenerative DisordersNeurodevelopmental DisorderNeuromuscular DiseasesNorth AmericaOutcomePatientsPhasePlanetsPoisonPublic HealthPublic Health Applications ResearchRecording of previous eventsRegistriesResearchResolutionRetrievalRisk AssessmentRisk FactorsRoleSentinelServicesSolidStreamSystemTechniquesTechnologyTimeToxic effectToxinUnited States National Aeronautics and Space AdministrationUnited States National Institutes of HealthUniversitiesWorkapplication programming interfacebasecloud baseddata exchangedesigndisease registrydrug developmentdrug discoveryharmful algal bloomsimage processingindexinginnovationnervous system disorderparallelizationpopulation basedremote sensingspatiotemporalsupport tools
中文摘要
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英文摘要
Specific Aim #1: Operationalize spatio-temporal CyanoHAB exposure epoch metrics
• Fuse multi-scale and disparate satellite remote sensing platforms and automate retrievals over
space and time to derive CyanoHAB exposure metrics. We will build enterprise software to fully
automate the harmonization and fusion of NASA’s Landsat-8 OLI and ESA’s Sentinel-2 and
Sentinel-3 satellite platforms to provide long-term (1984-present) moderate spatial resolution
(30meter pixels) and high temporal frequency CyanoHAB exposure metrics (Cyanobacteria
Intensity, Color Dissolved Organic Matter, Total Suspended Solids, Floating Algae Index,
Chlorophyll-a Concentration, & toxins). The decision support tool automates epoch synthesis to
understand incubation periods and exposure triggers for neurodegenerative diseases.
Specific Aim #2: Scale on-demand CHABMAP commercial product services
• Scale and implement CHABMAP data services for infinite scalability using BigData cloud
technologies. This Aim involves three main development efforts: adapting our proprietary
Geospatial Image and Processing System (GIPS) capabilities to an AWS-deployable auto-scaling
cluster, creation of user interfaces and application programming interfaces (APIs) to interact with
these services, and enhancements to the base GIPS framework to facilitate intercommunication
between remote GIPS-enabled archives and the cloud processing streams. This includes the
creation of deployable compute instances, optimization of computation and parallelization
specific to AWS deployment, optimization of temporary and long-term storage of intermediate
products, and optimization of communication and data transfer with end users. Ultimately, this
Aim will allow for the assessment and monitoring of CyanoHAB conditions for any waterbody or
region (i.e., North America) on the planet.
Specific Aim #3: Execute risk assessment frameworks with public health partners
• We will work in partnership with Cleveland Clinic, Dartmouth Hitchcock Medical Center,
University of Miami, Macquarie University, NIH’s Neuromuscular Diseases Research Section and
CDC’s Agency for Toxic Substances and Disease Registry (National ALS Registry) to assess the role
of CyanoHABs exposure as a risk factor for Amyotrophic lateral sclerosis (ALS) using patients,
clinic-, and population-based controls across diverse settings and geographies. Each application
end user has ongoing risk assessment frameworks (i.e., Gene-Environment, Residential History
Machine Learning, eco-epidemiological, molecular biology) which our CHABMAP technology will
integrate exposure epoch metrics to understand the etiology or ALS and support drug discovery.
Proposed Innovation
CHABMAP technology automates the quantification of toxic Cyanobacterial Harmful Algal Bloom (CHAB)
exposure epochs for any waterbody or catchment in the world for the past four decades using multi-scale
harmonized satellites. We use custom and proprietary techniques combined with BigData software to
generate historical exposure (“exposome”) profiles as well provide Decision Support Tools services for
CHAB monitoring in near-real time. During Phase 2 and beyond we work with world experts to integrate
our commercial products and services into neurodegenerative disease Gene-Environment (GxE) risk
assessment frameworks.
Proposed Products, Services, Outcomes
• Develop historical CHAB exposure measurements working with environmental agency partners
• Assessment of CyanoHABs as a risk factor for ALS across multiple, independent study regions
• CHABMAP on-demand Analytics-as-a-Service platform operating at end of Phase 2
• Support discovery of etiology and drug development for neurological disorders and diseases
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Lake Cyanobacterial Harmful Algal Bloom Mapping and Analysis Platform (CHAB-MAP)
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批准号:9044013
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项目类别:
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资助金额:$15.07万
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财政年份:2016
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负责人:Nathan Torbick
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依托单位:
Cyano-Map: Linking cyanobacteria metrics and human health
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批准号:8372518
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项目类别:
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资助金额:$14.8万
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财政年份:2012
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负责人:Nathan Torbick
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依托单位:
CyanoMap: Mapping inland lake quality and Amyotrophic lateral sclerosis risk fact
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批准号:8878259
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项目类别:
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资助金额:$46.01万
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财政年份:2012
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负责人:Nathan Torbick
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依托单位:
CyanoMap: Mapping inland lake quality and Amyotrophic lateral sclerosis risk fact
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批准号:8711729
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项目类别:
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资助金额:$47.43万
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财政年份:2012
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负责人:Nathan Torbick
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依托单位:
海外基金