Innovation through collaboration at the intersection of childhood development and cancer: a platform for the Gabriella Miller Kids First Pediatric Data Resource Center
Innovation through collaboration at the intersection of childhood development and cancer: a platform for the Gabriella Miller Kids First Pediatric Data Resource Center
批准号:
9924639
负责人:
Deanne Marie Taylor
金额:
$161.97万
依托单位国家:
美国
项目类别:
财政年份:
--
资助国家:
美国
项目状态:
未结题
起止时间:
至
关键词:
AdoptionChildhoodCollaborationsCommunitiesDataData AnalysesData CommonsData Coordinating CenterDevelopmentDictionaryDiseaseDocumentationEnsureEquipment and supply inventoriesFAIR principlesGenomicsLife Cycle StagesLinkMalignant NeoplasmsMetadataOccupationsOnline SystemsOntologyPediatric ResearchPeer ReviewPerformancePhasePhenotypePlayProcessProtocols documentationProviderPublicationsQuality ControlReportingReproducibilityResourcesSamplingSecureServicesSiteStructural Congenital AnomaliesSupport SystemSystemUnited States National Institutes of HealthVariantVocabularyWorkcloud platformcohortcomputing resourcesdata dictionarydata harmonizationdata portaldata qualitydata resourcedata submissiondisease phenotypegenomic dataimprovedinnovationlarge scale datamemberphenotypic dataportabilityresponsesoftware developmenttooltraitwhole genome
中文摘要
项目概要:数据协调中心
Gabriella米勒儿童第一儿科数据资源中心的数据协调中心(DCC)
(KFDRC)的任务是分析和协调全基因组序列和相关的丰富的
癌症和结构性出生缺陷队列的表型数据。DCC团队由受试者组成
儿科疾病专家,表型协调,大规模数据协调,软件
开发、基因组分析、管理和提供高性能计算
资源由于大约6,000个基因组和表型样本将在开始时准备好进行分析,
对于该项目,DCC的处理和注释流程将需要仔细定义但快速的响应
开始数据分析。由于数据是由多个站点生成和提交的,DCC将发挥关键作用,
在执行统一和确保数据质量方面发挥作用。为了使协调工作能够迅速完成,
和分析平台,DCC将建立一套初步的流程和最佳实践,
通过利用或扩展在现有数据共享中使用的协议来实现。作为最好的发展
实践是一个迭代过程,为了确保根据需要轻松采用最佳实践更改,DCC
我将与数据门户团队密切合作,采用数据和配置驱动的流程开发
原则通过这种迭代方式,DCC将能够不断改进工作流程、分析和
任务流程,向KFDRC数据门户提供高效的高质量数据流,以便发布到
科学界。在KFDRC发展的所有阶段,DCC将坚定地致力于
确保其所有系统使数据公平),
作为NIH Commons的一部分进行互操作。DCC团队将与顾问和其他团队合作,
KFDRC项目提供透明、可复制的分析/工作流程、数据字典和最佳实践,
儿科研究团体
可查找、可访问、可互操作和可重用(
英文摘要
Project Summary: Data Coordination Center
The Data Coordination Center (DCC) for the Gabriella Miller Kids First Pediatric Data Resource Center
(KFDRC) is tasked with analysis and harmonization of whole genome sequences and associated rich
phenotypic data across cancer and structural birth defect cohorts. The DCC team is comprised of subject
matter experts in pediatric disease, phenotypic harmonization, large-scale data coordination, software
development, genomic analyses, and management and providers of high-performance computational
resources. As approximately 6,000 genomic and phenotypic samples will be ready for analysis at the inception
of the project, the DCC's processing and annotation process will require a carefully defined but rapid response
to begin data analysis. As the data is being generated and submitted by multiple sites, the DCC will play a key
role in performing harmonization and ensuring data quality. To enable a quick standup of the harmonization
and analytical platforms, the DCC will establish an initial set of processes and best practices that will be
implemented by utilizing or expanding protocols used at existing Data Commons. As development of best
practices is an iterative process, and to ensure easy adoption of best practice changes as needed, the DCC
will work closely with the Data Portal team to employ data- and configuration-driven process development
principles. In this iterative fashion, the DCC will be able to continuously improve on workflow, analytics and
task processes to provide an efficient flow of high quality data to the KFDRC Data Portal for release to the
scientific community. During all phases of the KFDRC development, the DCC will have a deep commitment to
making sure all its systems enable data to be FAIR) for
interoperating as part of the NIH Commons. The DCC team will work with advisors and other teams in the
KFDRC project to deliver transparent, reproducible analytics/workflows, data dictionaries and best practices to
the pediatric research community.
findable, accessible, interoperable and reusable (
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Innovation through collaboration at the intersection of childhood development and cancer: a platform for the Gabriella Miller Kids First Pediatric Data Resource Center
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批准号:10213818
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项目类别:
-
资助金额:$161.83万
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财政年份:2017
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负责人:Deanne Marie Taylor
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依托单位:
海外基金