Implementing genomic medicine in clinical care of deaf patients

在聋哑患者的临床护理中实施基因组医学

• 批准号: 9974998
• 负责人: XUE Z LIU
• 金额: $ 63.81万
• 依托单位: UNIVERSITY OF MIAMI SCHOOL OF MEDICINE
• 依托单位国家: 美国
• 财政年份: 2013
• 资助国家: 美国
• 起止时间: 2013-03-08 至 2023-07-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/9974998
• 关键词: Address; Adult; Animal Model; Area; Attitude; Basic Science; Behavior; Biology; CRISPR/Cas technology; Candidate Disease Gene; Caring; Cell Therapy; Cells; Child; Clinic; Clinical; Clinical assessments; Clustered Regularly Interspaced Short Palindromic Repeats; Complex; DNA; Data; Databases; Diagnosis; Diagnostic; Electrophysiology (science); Etiology; Family; Feasibility Studies; Foundations; Gene Expression Profiling; Genes; Genetic; Genetic Counseling; Genome; Genomic approach; Genomic medicine; Genomics; Genotype; Grant; Hair Cells; Health Status; Hearing; Human; Individual; Infrastructure; International; Knock-in Mouse; Knowledge; Laboratories; Labyrinth; Language Development; Mediating; Medical; Medical Records; Minority; Modeling; Molecular; Mus; Mutation; Nucleic Acids; Outcome; Participant; Patient Care; Patients; Phenotype; Physiology; Population; Procedures; Proteins; Protocols documentation; Quality of Care; Recovery of Function; Role; Sampling; Speech Development; Surveys; Testing; Therapeutic; Therapeutic Intervention; Therapeutic Studies; Translating; Universities; Variant; accurate diagnosis; base; bioinformatics pipeline; causal variant; clinical care; clinical database; clinical practice; cohort; cost effectiveness; database of Genotypes and Phenotypes; deaf; deafness; exome; experimental study; functional genomics; gene discovery; gene therapy; genetic deafness; genetic variant; genome editing; genome sequencing; genomic data; genomic profiles; genomic tools; genomic variation; hearing impairment; hearing restoration; hearing screening; improved; in vivo; induced pluripotent stem cell; innovation; insight; next generation sequence data; normal hearing; novel; novel therapeutics; phenotypic data; pre-clinical; precision medicine; preclinical study; progenitor; repository; research clinical testing; screening; screening program; tool; variant detection

Abstract: This continuing proposal will translate basic research utilizing high-throughput genomic approaches and functional genomics into routine diagnostic and therapeutic tools for non-syndromic hearing loss (NSHL), the most common type of hearing impairment in children and adults. We have developed a genomic variant detection platform MiamiOtogenomics - composed of MiamiCapitalArray/MiamiOtoGenes panels/exome (WES)/genome (WGS) and developed a genotype and phenotype database – MiamiGeneHeal. As shown in the preliminary data, we have already collected approximately 3,000 DNA samples with phenotypic data from a large international cohort (Miami Otogenetic Repository) of families with NSHL. Moreover, we have excluded all known HL genes in over 200 families, successfully identified more than 18 potential new candidate genes, created animal models for human HL, and have generated human iPSCs from patients with genetic deafness. We will build on these accomplishments and preliminary data by proposing to complete the following specific aims: 1. Apply an innovative genomics-based MiamiOtogenomics pipeline for NSHL; 2. Identify factors influencing the decision to pursue and act on genomic testing; 3. Initiate preclinical therapeutic experiments as a proof-of-concept for potential treatments for HL. The foundation of the proposal will leverage the exceptional genomics capacity of collaborators at the University of Miami into a genomic-based, minority-focused, diagnostic and treatment pipeline for HL. The overarching purpose of this application is to transit discoveries made in laboratory to patient care. This study will translate genomic analysis into clinical hearing screening to elucidate the exact molecular etiology for HL, which will enable more accurate diagnoses, better quality of care, more effective genetic counseling, as well as improved cost-effectiveness in medical care. In addition, we expect to contribute significantly to genotype-phenotype studies and to establish a robust framework for assessing long-term clinical outcomes. Moreover, this study will contribute to our fundamental understanding of HL. Finally, our innovative preclinical therapeutic experiments in our knockin mouse and human iPSC models using CRISPR will potentially discover new treatments for HL. This study will inform two important clinical aspects of precision medicine in USA populations, especially in USA minorities: general acceptance in clinical practice and clinical utility. We will perform one of the largest and most integrated clinical/genomic/functional/novel therapeutic studies on NSHL to date. Our prior results, the interdisciplinary team's expertise and our established study infrastructure and population access support feasibility of our Aims.

摘要：这项持续的提案将利用高通量基因组方法和 将功能基因组学纳入非综合征性耳聋(NSHL)的常规诊断和治疗工具，这是最常见的 儿童和成人听力障碍的类型。我们开发了一个基因组变异检测平台 MiamiOto基因组学-由MiamiCapitalArray/MiamiOtoGenes面板/外显子组(WES)/基因组(WGS)和 开发了一个基因和表型数据库-MiamiGeneHeal。如初步数据所示，我们已经 从一个大型国际队列(迈阿密耳遗传学)收集了大约3,000个带有表型数据的DNA样本 具有NSHL的族库)。此外，我们已经排除了200多个家系中所有已知的HL基因，成功地 识别了18个潜在的新候选基因，创建了人类HL的动物模型，并产生了人类 遗传性耳聋患者的IPSCs。我们将在这些成就和初步数据的基础上，提出 完成以下具体目标：1.为非霍奇金淋巴瘤应用一种创新的基于基因组学的Miamio基因组学流水线； 确定影响进行基因组检测并采取行动的决定的因素；3.启动临床前治疗实验 作为HL潜在治疗的概念验证。该提案的基础将利用特殊的基因组学 迈阿密大学合作者将基因组为基础的、以少数族裔为重点的诊断和治疗的能力 HL的输油管道。该应用程序的主要目的是将实验室中的发现转移到患者护理中。这 这项研究将把基因组分析转化为临床听力筛查，以阐明HL确切的分子病因， 这将使更准确的诊断、更好的护理质量、更有效的遗传咨询以及 医疗保健方面的成本效益。此外，我们希望对基因-表型研究做出重大贡献，并 建立一个评估长期临床结果的强有力的框架。此外，这项研究将有助于我们的 对HL的基本认识。最后，我们的创新临床前治疗实验在我们的敲门小鼠和 使用CRISPR的人类IPSC模型可能会发现治疗HL的新方法。这项研究将告诉我们两个重要的 精确医学在美国人群中的临床方面，特别是在美国少数民族中：临床上的普遍接受 实践性和临床实用性。我们将进行规模最大、集成度最高的临床/基因组/功能/新技术之一 到目前为止，关于NSHL的治疗研究。我们之前的结果、跨学科团队的专业知识和我们既定的研究 基础设施和人口准入支持我们目标的可行性。