Atomic Resolution Characterization of Kindlin-2 Binding to Phosphatidylinositol Phosphatases in Lipid Bilayers by Solid-State NMR

通过固态 NMR 原子分辨率表征 Kindlin-2 与脂质双层中磷脂酰肌醇磷酸酶的结合

• 批准号: 10298124
• 负责人: Andrew Nieuwkoop
• 金额: $ 35.48万
• 依托单位: RUTGERS, THE STATE UNIV OF N.J.
• 依托单位国家: 美国
• 财政年份: 2021
• 资助国家: 美国
• 起止时间: 2021-09-30 至 2026-06-30
• 项目状态: 未结题
• 来源: https://reporter.nih.gov/project-details/10298124
• 关键词: Affect; Binding; Binding Proteins; Binding Sites; Cations; Cell Adhesion; Cell physiology; Cellular Membrane; Charge; Chemicals; Computational Technique; Crystallization; Data; Diabetes Mellitus; Diagnostic; Dimerization; Disease; Environment; Family; Foundations; Goals; Grain; Growth; Head; Health; Human; Individual; Integrins; Ions; Length; Lipid Bilayers; Lipid Binding; Lipids; Liposomes; Magic; Malignant Neoplasms; Maps; Measures; Mediating; Membrane; Membrane Lipids; Membrane Proteins; Modernization; PH Domain; Pathway interactions; Peripheral; Phosphate-Binding Proteins; Phosphatidylinositol 4,5-Diphosphate; Phosphatidylinositol Phosphates; Phosphatidylinositols; Phosphoric Monoester Hydrolases; Property; Protein Family; Proteins; Protons; Regulation; Resolution; Role; Sampling; Sensitivity and Specificity; Side; Signal Transduction; Site; Structural Protein; Structure; Surface; System; Techniques; Tertiary Protein Structure; Testing; Therapeutic; TimeLine; Ubiquitin; Work; analog; design; detection of nutrient; dimer; disease-causing mutation; experience; experimental study; improved; inorganic phosphate; insight; lipid I; member; molecular dynamics; novel; platelet protein P47; protein complex; protein protein interaction; protein structure; protonation; simulation; solid state nuclear magnetic resonance; tool

Project Summary: Kindlin-2 (K2) is a peripheral membrane protein which regulates integrin, a key protein that mediates cellular adhesion in humans. The goal of this project is to increase our structural understanding of K2 and the lipid membranes to which it binds, to provide key insights into the regulatory function of K2. The interactions of K2 with cellular membranes are difficult to study because membranes are highly dynamic and lack long-range order. As a result, our ability to study membranes and membrane proteins have been limited despite their potential to be impactful in a wide array of systems. In this proposal we will focus on the signaling lipids phosphatidylinositol phosphates (PIPs) which control the activity of K2. This lipid family is important for human health due to the role of PIPs as regulators of numerous cell processes including nutrient sensing and growth. The misregulation of PIP-dependent pathways is implicated in numerous rare and common diseases, including cancer and diabetes. Mechanistic details of PIP activation and regulation of protein binding partners, like K2, are essential to understanding and combating these diseases. Solid-state NMR is a unique tool for the atomic resolution characterization of the structure and dynamics of lipids and determining the factors that govern lipid-protein interactions. Over the five-year timeline of this proposal I plan to develop NMR experiments for directly investigating K2-lipid interfaces with high sensitivity and specificity. The focus of this study will be the conserved PIP binding domains of K2: a ubiquitin-like F0 domain and a pleckstrin homology (PH) domain. The presence of naturally NMR-active and chemically distinct phosphate groups in the PIPs will serve as a handle to directly probe the binding domain-lipid interface. Characterization of specific interactions between lipid head groups and proteins will be the foundation upon which we examine the structural basis of PIP recognition and the mechanism of K2 activation by PIPs. Beyond studies of the protein-lipid interface, we seek to understand how membrane binding affects the interactions of K2 with partner proteins and itself. Our experiments will take advantage of all the latest improvements in NMR hardware, particularly very-fast magic angle spinning. My group and I are highly experienced in developing novel experiments to assign the chemical shifts and solve structures of protein complexes, membrane proteins, and protein fibrils. This provides us with the tools that are required to tackle the structural aspects of lipid-protein and protein-protein interfaces. We will use an integrative approach in which state-of-the-art computational techniques will guide our experimental work. All-atom molecular dynamics will be used to provide hypotheses that may be tested with NMR and to provide atomic resolution interpretations of experimental data. This work is vital for assisting in the design of therapeutics and diagnostics that target K2 and other PIP binding systems. The results of this project will improve our ability to describe K2-PIP interactions, understand the effects of disease-causing mutations on the regulation of integrins, and propose solutions to some of the largest challenges in human health.

项目总结： Kindlin-2(K2)是一种调节整合素的外周膜蛋白，整合素是介导细胞周期的关键蛋白 人体内的粘附性。这个项目的目标是增加我们对K2和脂质的结构的理解 以提供对K2调节功能的关键见解。K2的相互作用 由于细胞膜是高度动态的，缺乏长程有序性，因此很难对其进行研究。 因此，我们研究膜和膜蛋白的能力一直受到限制，尽管它们有可能 在广泛的系统中发挥影响力。在这项提案中，我们将重点介绍信号脂类磷脂酰肌醇 控制K2活性的磷酸盐(PIP)。由于这种脂质家族的作用，它对人类健康很重要。 PIP作为许多细胞过程的调节器，包括营养传感和生长。监管不善 PIP依赖的通路与许多罕见和常见的疾病有关，包括癌症和糖尿病。 PIP激活的机制细节和蛋白结合伙伴的调节，如K2，是必不可少的 了解和抗击这些疾病。固体核磁共振是一种独特的原子分辨工具 脂类的结构和动力学特征及其决定脂蛋白的因素 互动。在这项提议的五年时间线上，我计划直接为 研究K2-脂质界面具有很高的敏感性和特异性。这项研究的重点将是保守的 K2的PIP结合域：泛素样F0结构域和Pleckstrin同源(PH)结构域。.的存在 天然的核磁共振活性和PIP中化学上不同的磷酸基团将作为直接 探测结合结构域-脂质界面。脂头基团和脂头基团之间特定相互作用的表征 蛋白质将是我们研究PIP识别的结构基础和机制的基础 PIP对K2的激活。除了对蛋白质-脂质界面的研究外，我们还试图了解膜是如何 结合作用影响K2与伙伴蛋白及其自身的相互作用。我们的实验将充分利用 核磁共振硬件的最新改进，特别是非常快的魔角旋转。我和我的团队高度重视 在开发新的实验来指认蛋白质的化学位移和解决结构方面经验丰富 复合体、膜蛋白和蛋白原纤维。这为我们提供了解决问题所需的工具 脂-蛋白质和蛋白质-蛋白质界面的结构方面。我们将使用一种综合的方法，其中 最先进的计算技术将指导我们的实验工作。全原子分子动力学将是 用于提供可用核磁共振测试的假设，并提供原子分辨率解释 实验数据。这项工作对于协助设计针对K2和K2的治疗和诊断是至关重要的 其他PIP绑定系统。这个项目的结果将提高我们描述K2-PIP相互作用的能力， 了解致病突变对整合素调节的影响，并提出解决方案 人类健康面临的一些最大挑战。