Microbial Genomics Biomedical Core

微生物基因组学生物医学核心

• 批准号: 10297544
• 负责人: Anne-Catrin Uhlemann
• 金额: $ 22.79万
• 依托单位: COLUMBIA UNIVERSITY HEALTH SCIENCES
• 依托单位国家: 美国
• 财政年份: 2014
• 资助国家: 美国
• 起止时间: 2014-09-24 至 2026-07-31
• 项目状态: 未结题
• 来源: https://reporter.nih.gov/project-details/10297544
• 关键词: 16S ribosomal RNA sequencing; Adherence; Affect; Antimicrobial Resistance; Area; Bacteria; Bacterial Genes; Bacterial Infections; Benign; Bioinformatics; CRISPR/Cas technology; Clinical; Clustered Regularly Interspaced Short Palindromic Repeats; Collaborations; Communities; Complement; Congenital Abnormality; Consultations; Disease; Disease model; Drug resistance; Education; Ensure; Environment; Event; Experimental Designs; Future; Genes; Genetic; Genetic Polymorphism; Genome; Genomic medicine; Genomics; Goals; Heme; Hi-C; Homeostasis; Human; Individual; Infection; Infection prevention; Investigation; Laboratories; Life Style; Medical center; Mentorship; Metabolic; Metabolism; Metagenomics; Methods; Microbe; Microbial Genetics; Microbiology; Mission; Modernization; Molecular Biology; Multi-Drug Resistance; Mus; Mutation; National Institute of Diabetes and Digestive and Kidney Diseases; New York City; Nucleic Acids; Organism; Participant; Pathogenesis; Pathogenicity; Pathology; Pathway interactions; Patients; Pattern; Phenotype; Plasmids; Play; Policies; Preparation; Public Health; Reproducibility; Research; Research Design; Research Personnel; Research Project Grants; Resource Sharing; Resources; Ribosomal RNA; Role; Sample Size; Sampling; Services; Site; Students; Symptoms; System; Technology; Testing; Universities; Urinary tract infection; Urine; Urologic Diseases; Urology; Uropathogen; Urothelium; Vesico-Ureteral Reflux; base; biobank; cohort; comparative; comparative genomics; design; experience; experimental study; functional genomics; genome analysis; genome sequencing; human subject; improved; individual variation; instrument; interest; knockout gene; lectures; member; metagenome; microbial genomics; microbiome; microbiome analysis; mouse model; mutant; next generation; next generation sequencing; novel; outreach; pathogen; precision medicine; programs; prospective; response to injury; sample collection; symptomatology; tool; urinary; urologic; whole genome

MICROBIAL GENOMICS BIOMEDICAL CORE (MGBC): PROJECT SUMMARY/ABSTRACT The mission of the Columbia University O’Brien Urology Research Center is to identify genetic factors and congenital malformations, such as vesicoureteral reflux, that predispose individuals to urinary tract infections (UTI) and to explore host-bacterial metabolic processes, such as heme pathways, that enable or prevent infection. UTI represent one of the most common infections, affecting 150 million people per year worldwide. In support of the goals of the Columbia O’Brien Urology Research Center the Microbial Genomics and Biomedical Core (MGBC) will provide high quality services for biobanking, extended bacterial culture, microbial genomics (microbiome analyses, comparative genomics), microbial genetics, consultation for study design and outreach for novel investigations into the pathogenesis of urinary tract infections. The MGBC will enable Columbia O’Brien Center investigators to have access to specialized genomic technologies and coordinated expert consultations for improved rigor and reproducibility in genomics and precision medicine. In recognition of the increasing impact of antimicrobial resistance in urinary tract infections the MGBC has established a biorepository of multi-drug resistant UTI isolates. The services and biorepository are specifically designed to meet the needs of two of the Research Projects of the Columbia O’Brien Center and Opportunity Pool Awardees and will be available to the wider urology research community. The MGBC will accomplish these goals through the following aims: 1) Expand a biorepository of multi-drug resistant UTI isolate to multiple sites across New York City, establish a urine biorepository from clinically well-defined patients with different UTI symptoms and perform extended urine culture for organism identification; 2) Provide Microbiome and metagenome analyses and Hi-C/MetaPore-C sequencing; 3) Facilitate whole genome sequencing of dominant UTI pathogenic clones to elucidate bacterial determinants of UTI symptomatology; 4) Generate bacterial mutants in multi-drug resistant clinical UTI isolates leveraging a highly efficient CRISPR-Cas system; and 6) Provide consultations and support of study design for the Research Projects. Importantly, the MGBC will serve as a national resource for members of other George M. O'Brien Cooperative Research Centers and other NIDDK Urologic Research Programs. In close collaboration with the Administrative Core the MGBC will ensure adherence to all fiscal, administrative, and resource sharing policies. The MGBC will also contribute to the goals of the Educational Enrichment and Opportunity Pool Programs through lectures, student mentorship, and guidance on experimental design related to microbial genomics for Opportunity Pool awardees. Taken together, the Columbia O’Brien U54 MGBC will enable state- of-the-art characterization of microbes in UTIs, with a focus on evolving multi-drug resistance, by providing a complementary set of tools harnessing molecular biology, genetics, and ‘omics technologies.

微生物基因组学生物医学核心(MGBC)：项目摘要/摘要 哥伦比亚大学奥布莱恩泌尿学研究中心的使命是识别遗传因素和 易患尿路感染的先天性畸形，如膀胱输尿管返流 (UTI)，并探索宿主-细菌代谢过程，如使或防止 感染。尿路感染是最常见的感染之一，每年影响全球1.5亿人。在……里面 支持哥伦比亚奥布莱恩泌尿外科研究中心微生物基因组学和生物医学的目标 科尔(MGBC)将为生物库、扩展细菌培养、微生物基因组学提供高质量的服务 (微生物组分析、比较基因组学)、微生物遗传学、研究设计和推广咨询 对尿路感染的发病机制进行新的研究。MGBC将使哥伦比亚·奥布莱恩 中心研究人员能够获得专门的基因组技术和协调的专家咨询 以提高基因组学和精密医学的严密性和重复性。在认识到越来越大的影响 关于尿路感染的耐药性MGBC建立了一个多药生物信息库 耐药UTI分离株。服务和生物存储库是专门为满足以下两项需求而设计的 哥伦比亚大学奥布莱恩中心和机会池奖获得者的研究项目，并将向 更广泛的泌尿科研究社区。MGBC将通过以下目标实现这些目标：1) 将耐多药UTI分离株的生物库扩展到纽约市的多个地点，建立一个 来自临床明确的具有不同尿路感染症状的患者的尿液生物储存库，并执行延长尿液 用于生物体鉴定的培养；2)提供微生物组和元基因组分析以及Hi-C/MetaPore-C 测序；3)促进UTI优势致病克隆的全基因组测序以阐明细菌 尿路感染症状学的决定因素；4)在多重耐药的临床尿路感染分离株中产生细菌突变 利用高效的CRISPR-CAS系统；以及6)为以下项目提供研究设计咨询和支持 研究项目。重要的是，MGBC将成为其他乔治的成员的国家资源 M.O‘Brien合作研究中心和其他NIDDK泌尿外科研究项目。密切合作 有了管理核心，MGBC将确保遵守所有财务、行政和资源共享 政策。MGBC还将为教育丰富和机会池的目标做出贡献 通过讲课、学生辅导和与微生物相关的实验设计指导的课程 机会池获奖者的基因组学。总而言之，哥伦比亚奥布莱恩U54 MGBC将使州- UTIs中微生物的最新表征，重点是演变的多重耐药，通过提供 利用分子生物学、遗传学和组学技术的一套补充工具。