Mechanism of carbon skeleton formation in molybdenum cofactor biosynthesis
Mechanism of carbon skeleton formation in molybdenum cofactor biosynthesis
批准号:
10646323
负责人:
Kenichi Yokoyama
金额:
$36.07万
依托单位:
依托单位国家:
美国
项目类别:
财政年份:
2015
资助国家:
美国
项目状态:
已结题
起止时间:
2015-07-01 至 2024-06-30
关键词:
Active SitesAddressAffectAnabolismAntibioticsBacteriaBacterial InfectionsBiochemicalBiological AssayBrainC-terminalCatalysisCessation of lifeChildhoodChronicCoenzymesCombined molybdoflavoprotein enzyme deficiencyCommunicable DiseasesComplexDevelopmentDiseaseElectron Nuclear Double ResonanceEnterobacteriaceaeEnvironmentEnzymesFamilyFoundationsFundingFutureGenesGoalsGrowthGuanineGuanosineHumanHypoxiaIndividualInheritedKnowledgeMutationNutrientOrganismOxidation-ReductionPathway interactionsPatientsPeptidesPeriodicityProteinsPublic HealthReactionRecurrenceResearchResistanceRestSeveritiesSiteStructureTailTestingVertebral columnX-Ray Crystallographyacute symptombiophysical techniquescarbon skeletonchronic infectioncofactorcombatelectron donorenzyme mechanismgut inflammationgut microbiotahuman diseaseinhibitorinhibitor therapyinsightloss of function mutationmolybdenum cofactornovel therapeuticspathogenpathogenic bacteriapharmacologicpyranopterintherapeutic developmenttripolyphosphate
中文摘要
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英文摘要
Project Summary/Abstract
Molybdenum cofactor (Moco) is a redox cofactor found in almost all organisms. In humans, it is essential for
normal brain development, and mutations in Moco biosynthetic genes cause the fatal and currently incurable
disease, Moco deficiency (MoCD). In pathogenic bacteria, Moco is essential for their growth under hypoxic and
nutrient limiting environments, and therefore essential for pathogen persistence in mammalian hosts. Chronic
bacterial infections are resistant to many antibiotics and cause the recurrence of acute symptoms. However, the
development of therapeutics against MoCD or antibiotics targeting Moco biosynthesis in pathogenic bacteria are
currently difficult due to our limited understanding of the mechanism of Moco biosynthesis. The long-term goal
of this project is to provide a mechanistic understanding of Moco biosynthesis in pathogenic bacteria as well as
in humans. The focus of the current application is the mechanism of two enzymes (MoaA and MoaC) responsible
for the formation of the pyranopterin structure of Moco from guanine 5'-triphosphate (GTP). While the catalytic
functions of MoaA and MoaC had remained ambiguous for >20 years, we recently demonstrated that MoaA
catalyzes the transformation of GTP into 3',8-cyclo-dihydro-GTP (3',8-cH2GTP), while MoaC catalyzes the
conversion of 3',8-cH2GTP to cPMP. In this application, we will investigate the catalytic mechanisms of MoaA
and MoaC in both humans and bacteria through the following three Aims. In Aim 1, the redox function of 4Fe-4S
clusters in MoaA will be investigated both in the resting state and during turnover to address one of the key
unsolved mysteries of the radical SAM enzyme mechanisms. In Aim 2, the function of the C-terminal tail of MoaA
and the mechanism of peptide rescue of MoCD-causing mutations will be investigated through NMR, X-ray
crystallography and biochemical assays using bacterial and human enzymes. In Aim 3, we will test a covalent
and non-covalent mechanisms for MoaC catalysis and investigate the generality of mechanism-based inhibition
of bacterial and human enzymes. The proposed research is significant because it will provide mechanistic
insights into the formation of the Moco backbone and the scientific basis for future development of Moco
biosynthesis inhibitors and novel therapeutics to treat MoCD.
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Lessons From the Studies of a CC Bond Forming Radical SAM Enzyme in Molybdenum Cofactor Biosynthesis.
钼辅因子生物合成中 CC 键形成自由基 SAM 酶研究的经验教训。
DOI:
10.1016/bs.mie.2018.04.014
发表时间:
2018
期刊:
Methods in enzymology
影响因子:
--
作者:
[Pang,Haoran, Yokoyama,Kenichi]
通讯作者:
Yokoyama,Kenichi
DOI:
10.1039/c8np00006a
发表时间:
2018-07-18
期刊:
Natural product reports
影响因子:
11.9
作者:
[Yokoyama K, Lilla EA]
通讯作者:
Lilla EA
DOI:
10.1021/acs.biochem.7b00878
发表时间:
2018-01-30
期刊:
Biochemistry
影响因子:
2.9
作者:
[Yokoyama K]
通讯作者:
Yokoyama K
DOI:
10.1021/acsbiomedchemau.1c00046
发表时间:
2022-04-20
期刊:
ACS BIO & MED CHEM AU
影响因子:
--
作者:
[Yokoyama, Kenichi, Li, Di, Pang, Haoran]
通讯作者:
Pang, Haoran
DOI:
10.1021/jacs.2c05565
发表时间:
2022-10-19
期刊:
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
影响因子:
15
作者:
[Nguyen, Hai, Kresna, I. Dewa Made, Boehringer, Nils, Ruel, Jeremie, de la Mora, Eugenio, Kramer, Jil-Christine, Lewis, Kim, Nicolet, Yvain, Schaeberle, Till F., Yokoyama, Kenichi]
通讯作者:
Yokoyama, Kenichi
共 7 条
Mechanism of cofactor biosynthesis required for chronic bacterial infection
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批准号:8964738
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项目类别:
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资助金额:$30.48万
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财政年份:2015
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负责人:Kenichi Yokoyama
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Mechanism of cofactor biosynthesis required for chronic bacterial infection
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Biosynthesis of antifungal nucleoside antibiotics
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Mechanism of carbon skeleton formation in molybdenum cofactor biosynthesis
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批准号:10242931
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项目类别:
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资助金额:$37.46万
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财政年份:2015
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负责人:Kenichi Yokoyama
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依托单位:
Biosynthesis of antifungal nucleoside antibiotics
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批准号:10678669
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资助金额:$33.97万
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Mechanism of carbon skeleton formation in molybdenum cofactor biosynthesis
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批准号:10058693
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Biosynthesis of peptidyl nucleoside antifungal antibiotics
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批准号:8944844
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资助金额:$30.48万
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财政年份:2015
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负责人:Kenichi Yokoyama
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依托单位:
Biosynthesis of antifungal nucleoside antibiotics
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批准号:10389266
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资助金额:$15.92万
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依托单位:
Mechanism of carbon skeleton formation in molybdenum cofactor biosynthesis
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批准号:10418782
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项目类别:
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资助金额:$37.6万
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财政年份:2015
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负责人:Kenichi Yokoyama
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依托单位:
Biosynthesis of antifungal nucleoside antibiotics-Undergrad research supplement
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批准号:10393814
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项目类别:
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资助金额:$0.97万
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财政年份:2015
-
负责人:Kenichi Yokoyama
-
依托单位:
Biosynthesis of antifungal nucleoside antibiotics
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批准号:10264167
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项目类别:
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资助金额:$32.86万
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财政年份:2015
-
负责人:Kenichi Yokoyama
-
依托单位:
海外基金