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Project Summary/Abstract This proposal is designed to extend the work of the PsychENCODE Data Analysis Core (DAC) grant to implement a long term stewardship plan for the data and resources generated both by the parent grant and the broader PsychENCODE consortium, and continue to support data coordinating for the PsychENCODE consortium for an additional year. Sage Bionetwork, as the DCC of the PsychENCODE program over the last 7 years has been responsible for tracking, curating, distributing of data, methods, and analysis results as well as supporting the DAC through access to raw data and re-distribution of harmonized datasets. In this role we have built out processes for collecting and curating data, analytical methods and provided spaces for collaborative analysis. This effort culminated in the phase I analysis of a harmonized bulk tissue dataset of genomic, transcriptomic, and epigenomic data from >2000 donor brains resulting in manuscripts published in a special issue of Science. A similar effort is ongoing in phase II focusing on single cell data. Combined, the PsychENCODE data corpus is close to 500 terabytes of data stored in Synapse, an NIH data repository and made available in a custom knowledge portal, the PsychEncode portal. Here we propose how to transition long term stewardship of this data to the NIMH data archive (NDA), and support of data from 14 phase II grants with an end date beyond the March-31 2023 project end of the parent grant.
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DOI: 10.1093/hmg/ddad009
发表时间: 2023-05-18
期刊: Human molecular genetics
影响因子: 3.5
作者: []
通讯作者:
DOI: 10.1093/bioinformatics/btaa866
发表时间: 2021-07-19
期刊: Bioinformatics (Oxford, England)
影响因子: --
作者: [Nguyen ND, Jin T, Wang D]
通讯作者: Wang D
DOI: 10.1016/j.crmeth.2023.100409
发表时间: 2023-02-27
期刊: Cell reports methods
影响因子: --
作者: []
通讯作者:
DOI: 10.1186/s13024-021-00450-7
发表时间: 2021-05-05
期刊: Molecular neurodegeneration
影响因子: 15.1
作者: [Toker L, Tran GT, Sundaresan J, Tysnes OB, Alves G, Haugarvoll K, Nido GS, Dölle C, Tzoulis C]
通讯作者: Tzoulis C
12
    EDAC: ENCODE Data Analysis Center
    Integrative analysis of genomics and imaging data from the BRAIN Initiative and other public data sources
    • 批准号:
      10190025
    • 项目类别:
    • 资助金额:
      $130.99万
    • 财政年份:
      2021
    • 负责人:
      Mark Bender Gerstein
    • 依托单位:
    Laboratory, Data Analysis, and Coordinating Center (LDACC) for the Developmental Human Genotype-Tissue Expression Project
    • 批准号:
      10306961
    • 项目类别:
    • 资助金额:
      $178.83万
    • 财政年份:
      2021
    • 负责人:
      Mark Bender Gerstein
    • 依托单位:
    EDAC: ENCODE Data Analysis Center
    国内基金
    海外基金
    Sitagliptin通过microbiota-gut-brain轴在2型糖尿病致阿尔茨海默样变中的脑保护作用机制
    • 批准号:
      81801389
    • 项目类别:
      青年科学基金项目
    • 资助金额:
      21.0万元
    • 批准年份:
      2018
    • 负责人:
      田茗源
    • 依托单位:
    平扫描数据导引的超低剂量Brain-PCT成像新方法研究
    • 批准号:
      81101046
    • 项目类别:
      青年科学基金项目
    • 资助金额:
      23.0万元
    • 批准年份:
      2011
    • 负责人:
      黄静
    • 依托单位: