1/2 Discovery and validation of neuronal enhancers associated with the development of psychiatric disorders
1/2 Discovery and validation of neuronal enhancers associated with the development of psychiatric disorders
批准号:
10801125
负责人:
Mark Bender Gerstein
金额:
$28.01万
依托单位国家:
美国
项目类别:
财政年份:
2023
资助国家:
美国
项目状态:
已结题
起止时间:
2023-04-01 至 2024-03-31
关键词:
AwardBrainCellsCollaborationsCommunitiesCore GrantCustomDataData AnalysesData Coordinating CenterData SetDevelopmentEnhancersEnsureFundingGrantIndividualKnowledge PortalManuscriptsMassachusettsMental disordersMetadataMethodsNational Institute of Mental HealthNeuronsPhaseProcessPublicationsPublishingRecordsReportingResearchResourcesRoleScienceServicesStandardizationSynapsesTissuesTrainingUnited States National Institutes of HealthUniversitiesValidationWorkanalytical methodcomputerized data processingdata accessdata archivedata curationdata dictionarydata harmonizationdata modelingdata preservationdata repositorydata resourcedata sharingdesigndistributed dataepigenomicsgenome resourcegenomic datamembermigrationparent grantpetabyteprogramsrepositoryterabytetranscriptomics
中文摘要
项目总结/摘要
该建议旨在扩展PsychENCODE数据分析核心(DAC)的工作
资助实施一项长期的数据和资源管理计划,
家长赠款和更广泛的PsychENCODE财团,并继续支持数据
为PsychENCODE联盟再协调一年。Sage Bionetwork作为
在过去的7年里,PsychENCODE项目的DCC一直负责跟踪,
管理、分发数据、方法和分析结果,并通过以下方式支持DAC
获取原始数据和重新分发统一数据集。在这个角色中,我们已经建立了
收集和整理数据的过程,分析方法,并为以下方面提供空间:
协同分析这一努力最终在第一阶段的分析协调散装组织
来自>2000个供体大脑的基因组、转录组和表观基因组数据集,
在《科学》特刊上发表的手稿。在第二阶段也在进行类似的努力,
单细胞数据。PsychENCODE数据集的总数据量接近500 TB
存储在Synapse中,一个NIH数据存储库,并在自定义知识门户中提供,
PsychEncode门户。在这里,我们建议如何将这些数据的长期管理过渡到
NIMH数据档案(NDA),以及来自14项第二阶段赠款的数据支持,结束日期超过
2023年3月31日,项目结束。
英文摘要
Project Summary/Abstract
This proposal is designed to extend the work of the PsychENCODE Data Analysis Core (DAC)
grant to implement a long term stewardship plan for the data and resources generated both by
the parent grant and the broader PsychENCODE consortium, and continue to support data
coordinating for the PsychENCODE consortium for an additional year. Sage Bionetwork, as the
DCC of the PsychENCODE program over the last 7 years has been responsible for tracking,
curating, distributing of data, methods, and analysis results as well as supporting the DAC through
access to raw data and re-distribution of harmonized datasets. In this role we have built out
processes for collecting and curating data, analytical methods and provided spaces for
collaborative analysis. This effort culminated in the phase I analysis of a harmonized bulk tissue
dataset of genomic, transcriptomic, and epigenomic data from >2000 donor brains resulting in
manuscripts published in a special issue of Science. A similar effort is ongoing in phase II focusing
on single cell data. Combined, the PsychENCODE data corpus is close to 500 terabytes of data
stored in Synapse, an NIH data repository and made available in a custom knowledge portal, the
PsychEncode portal. Here we propose how to transition long term stewardship of this data to the
NIMH data archive (NDA), and support of data from 14 phase II grants with an end date beyond
the March-31 2023 project end of the parent grant.
期刊论文(16)
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科研奖励(0)
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DOI:
10.1093/hmg/ddad009
发表时间:
2023-05-18
期刊:
Human molecular genetics
影响因子:
3.5
作者:
[]
通讯作者:
DOI:
10.1093/bioinformatics/btaa866
发表时间:
2021-07-19
期刊:
Bioinformatics (Oxford, England)
影响因子:
--
作者:
[Nguyen ND, Jin T, Wang D]
通讯作者:
Wang D
DOI:
10.1016/j.crmeth.2023.100409
发表时间:
2023-02-27
期刊:
Cell reports methods
影响因子:
--
作者:
[]
通讯作者:
DOI:
10.1186/s13024-021-00450-7
发表时间:
2021-05-05
期刊:
Molecular neurodegeneration
影响因子:
15.1
作者:
[Toker L, Tran GT, Sundaresan J, Tysnes OB, Alves G, Haugarvoll K, Nido GS, Dölle C, Tzoulis C]
通讯作者:
Tzoulis C
DOI:
10.1093/bioinformatics/btac789
发表时间:
2023-01-01
期刊:
Bioinformatics (Oxford, England)
影响因子:
--
作者:
[]
通讯作者:
共 12 条
EDAC: ENCODE Data Analysis Center
-
批准号:10547896
-
项目类别:
-
资助金额:$38.59万
-
财政年份:2022
-
负责人:Mark Bender Gerstein
-
依托单位:
Integrative analysis of genomics and imaging data from the BRAIN Initiative and other public data sources
-
批准号:10190025
-
项目类别:
-
资助金额:$130.99万
-
财政年份:2021
-
负责人:Mark Bender Gerstein
-
依托单位:
Laboratory, Data Analysis, and Coordinating Center (LDACC) for the Developmental Human Genotype-Tissue Expression Project
-
批准号:10306961
-
项目类别:
-
资助金额:$178.83万
-
财政年份:2021
-
负责人:Mark Bender Gerstein
-
依托单位:
EDAC: ENCODE Data Analysis Center
-
批准号:10240955
-
项目类别:
-
资助金额:$197.53万
-
财政年份:2021
-
负责人:Mark Bender Gerstein
-
依托单位:
Laboratory, Data Analysis, and Coordinating Center (LDACC) for the Developmental Human Genotype-Tissue Expression Project
-
批准号:10709553
-
项目类别:
-
资助金额:$171.18万
-
财政年份:2021
-
负责人:Mark Bender Gerstein
-
依托单位:
A Big Data Approach to Identify Epigenetic, Transcriptomic, and Network Dynamics as Immune Dysfunction Drivers Associated with HIV Infection and Substance Use Disorder
-
批准号:10408130
-
项目类别:
-
资助金额:$56.09万
-
财政年份:2020
-
负责人:Mark Bender Gerstein
-
依托单位:
The Y-SCORCH Data Generation Center at Yale for Single-Cell Opioid Responses in the Context of HIV
-
批准号:10685384
-
项目类别:
-
资助金额:$300.0万
-
财政年份:2020
-
负责人:Mark Bender Gerstein
-
依托单位:
The Y-SCORCH Data Generation Center at Yale for Single-Cell Opioid Responses in the Context of HIV
-
批准号:10461029
-
项目类别:
-
资助金额:$300.0万
-
财政年份:2020
-
负责人:Mark Bender Gerstein
-
依托单位:
Supplement: Human Brain Collection for Study of the Neuropathogenesis of SARS-CoV-2, HIV-1, and Opioid Use Disorder
-
批准号:10468477
-
项目类别:
-
资助金额:$16.75万
-
财政年份:2020
-
负责人:Mark Bender Gerstein
-
依托单位:
The Y-SCORCH Data Generation Center at Yale for Single-Cell Opioid Responses in the Context of HIV
-
批准号:10223258
-
项目类别:
-
资助金额:$300.0万
-
财政年份:2020
-
负责人:Mark Bender Gerstein
-
依托单位:
Enhancing open data sharing for functional genomics experiments: Measures to quantify genomic information leakage and file formats for privacy preservation
-
批准号:10703382
-
项目类别:
-
资助金额:$52.65万
-
财政年份:2020
-
负责人:Mark Bender Gerstein
-
依托单位:
The Y-SCORCH Data Generation Center at Yale for Single-Cell Opioid Responses in the Context of HIV
-
批准号:10037753
-
项目类别:
-
资助金额:$300.0万
-
财政年份:2020
-
负责人:Mark Bender Gerstein
-
依托单位:
Enhancing open data sharing for functional genomics experiments: Measures to quantify genomic information leakage and file formats for privacy preservation
-
批准号:10443832
-
项目类别:
-
资助金额:$52.65万
-
财政年份:2020
-
负责人:Mark Bender Gerstein
-
依托单位:
A Big Data Approach to Identify Epigenetic, Transcriptomic, and Network Dynamics as Immune Dysfunction Drivers Associated with HIV Infection and Substance Use Disorder
-
批准号:10632047
-
项目类别:
-
资助金额:$54.86万
-
财政年份:2020
-
负责人:Mark Bender Gerstein
-
依托单位:
Supplement: Human Brain Collection for Study of the Neuropathogenesis of SARS-CoV-2, HIV-1, and Opioid Use Disorder
-
批准号:10684989
-
项目类别:
-
资助金额:$16.4万
-
财政年份:2020
-
负责人:Mark Bender Gerstein
-
依托单位:
A Big Data Approach to Identify Epigenetic, Transcriptomic, and Network Dynamics as Immune Dysfunction Drivers Associated with HIV Infection and Substance Use Disorder
-
批准号:10214582
-
项目类别:
-
资助金额:$57.29万
-
财政年份:2020
-
负责人:Mark Bender Gerstein
-
依托单位:
Enhancing open data sharing for functional genomics experiments: Measures to quantify genomic information leakage and file formats for privacy preservation
-
批准号:10251876
-
项目类别:
-
资助金额:$52.65万
-
财政年份:2020
-
负责人:Mark Bender Gerstein
-
依托单位:
A Big Data Approach to Identify Epigenetic, Transcriptomic, and Network Dynamics as Immune Dysfunction Drivers Associated with HIV Infection and Substance Use Disorder
-
批准号:10055913
-
项目类别:
-
资助金额:$56.77万
-
财政年份:2020
-
负责人:Mark Bender Gerstein
-
依托单位:
1/2 Discovery and validation of neuronal enhancers associated with the development of psychiatric disorders
-
批准号:10377537
-
项目类别:
-
资助金额:$111.19万
-
财政年份:2018
-
负责人:Mark Bender Gerstein
-
依托单位:
1/2 Discovery and validation of neuronal enhancers associated with the development of psychiatric disorders
-
批准号:9896859
-
项目类别:
-
资助金额:$113.21万
-
财政年份:2018
-
负责人:Mark Bender Gerstein
-
依托单位:
国内基金
海外基金
Sitagliptin通过microbiota-gut-brain轴在2型糖尿病致阿尔茨海默样变中的脑保护作用机制
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批准号:81801389
-
项目类别:青年科学基金项目
-
资助金额:21.0万元
-
批准年份:2018
-
负责人:田茗源
-
依托单位:
平扫描数据导引的超低剂量Brain-PCT成像新方法研究
-
批准号:81101046
-
项目类别:青年科学基金项目
-
资助金额:23.0万元
-
批准年份:2011
-
负责人:黄静
-
依托单位: