课题基金 / 基金详情

INTERNET BASED TOOLS RESOURCE FOR PROTEIN MASS SPECTROMETRY

INTERNET BASED TOOLS RESOURCE FOR PROTEIN MASS SPECTROMETRY
基于互联网的蛋白质质谱工具资源
批准号:
7722190
负责人:
JULIO C PADOVAN
金额:
$1.66万
依托单位:
依托单位国家:
美国
项目类别:
财政年份:
2008
资助国家:
美国
项目状态:
已结题
起止时间:
2008-03-01 至 2009-02-28

项目摘要

项目成果

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中文摘要
翻译
这个子项目是众多研究子项目之一
英文摘要
This subproject is one of many research subprojects utilizing the resources provided by a Center grant funded by NIH/NCRR. The subproject and investigator (PI) may have received primary funding from another NIH source, and thus could be represented in other CRISP entries. The institution listed is for the Center, which is not necessarily the institution for the investigator. We continue to maintain an internet based bioinformatic resource for protein mass spectrometry. These tools ca be found at the universal resource locator http://www.rockefeller.edu/labheads/chait/tools.php and include: ProFound ProFound is a tool for searching a protein sequence collections with peptide mass maps. A Bayesian algorithm is used to rank the protein sequences in the database according to their probability of producing the peptide map. ProteinInfo ProteinInfo is a collection of tools for retrieval and analysis of protein sequences. The capabilities of the analysis tools include peptide mapping, mass spectrometric fragmentation analysis, disulfide mapping, etc. PeptideMap PeptideMap is a tool for finding modifications on polypeptide sequences. The modifications can be affecting single amino acids (e.g. phoshorylation or oxidation) or cross-linking two amino acids (e.g. disulfide bonds or chemical cross-linking reagents). PepFrag PepFrag is a tool for identifying proteins from a collection of sequences that matches a single tandem mass spectrum. X! Tandem X! Tandem is a tool for identifying proteins from a collection of peptide sequences that matches tandem mass spectra. X! Hunter X! Hunter is a tool for identifying proteins that matches tandem mass spectra to a library of spectra that have been confidently assigned to a particular peptide sequence. GPMDB GPMDB is a database of tandem mass spectra and their assigned peptide sequences. It is designed to aid in the difficult process of validating peptide MS/MS spectra. NCDIR Strain Database The National Center for Dynamic Interactome Research (NCDIR) Strain Database
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INSTALLATION OF PROGRAMS & MAINTENANCE OF COMPUTER RESOURCES
  • 批准号:
    8361550
  • 项目类别:
  • 资助金额:
    $1.3万
  • 财政年份:
    2011
  • 负责人:
    JULIO C PADOVAN
  • 依托单位:
MAINTENANCE OF MASS SPECTROMETERS & LAB INSTRUMENTATION
  • 批准号:
    8361487
  • 项目类别:
  • 资助金额:
    $0.52万
  • 财政年份:
    2011
  • 负责人:
    JULIO C PADOVAN
  • 依托单位:
INTERNET BASED TOOLS RESOURCE FOR PROTEIN MASS SPECTROMETRY
  • 批准号:
    8361488
  • 项目类别:
  • 资助金额:
    $1.04万
  • 财政年份:
    2011
  • 负责人:
    JULIO C PADOVAN
  • 依托单位:
TRAINING OF BIOMEDICAL SCIENTISTS IN MASS SPECTROMETRY
  • 批准号:
    8361493
  • 项目类别:
  • 资助金额:
    $5.22万
  • 财政年份:
    2011
  • 负责人:
    JULIO C PADOVAN
  • 依托单位:
海外基金