Epigenetic miRNA, SNP Signatures, and their Functions in Lung Cancer Outcomes

表观遗传 miRNA、SNP 特征及其在肺癌结果中的功能

• 批准号: 9233059
• 负责人: Jian Gu
• 金额: $ 48万
• 依托单位: UNIVERSITY OF TX MD ANDERSON CAN CTR
• 依托单位国家: 美国
• 财政年份: 2014
• 资助国家: 美国
• 起止时间: 2014-04-01 至 2019-02-28
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/9233059
• 关键词: Affect; Apoptosis; Binding; Biogenesis; Bioinformatics; Biological; Biological Assay; Biological Markers; Biological Process; Cancer Center; Cancer Etiology; Cancer Patient; Cancer cell line; Cell Death; Cell Proliferation; Cell Survival; Cell physiology; Cells; Cessation of life; Characteristics; Clinical; Clinical Data; Custom; Detection; Development; Disease; Ectopic Expression; Epidemiology; Epigenetic Process; Gene Expression; Gene Targeting; Genes; Genetic; Genetic Markers; Genetic Transcription; Genetic Variation; Genotype; Goals; Human; Inherited; Malignant Neoplasms; Malignant neoplasm of lung; Mediating; Messenger RNA; MicroRNAs; Molecular; Non-Small-Cell Lung Carcinoma; Outcome; Outcome Study; Pathway interactions; Patient Rights; Patient-Focused Outcomes; Patients; Phase; Plasma; Plasmid Cloning Vector; Plasmids; Platinum; Play; Population; Predisposition; Proteins; RNA; Regulatory Pathway; Reproducibility; Reverse Transcriptase Polymerase Chain Reaction; Reverse Transcription; Role; Sampling; Serum; Signal Pathway; Single Nucleotide Polymorphism; Site; Specimen; Spliced Genes; System; Technology; Testing; Therapeutic Agents; Time; Translations; Treatment outcome; Validation; Variant; Xenograft procedure; base; bronchial epithelium; cancer cell; cancer diagnosis; cancer risk; carcinogenesis; chemoradiation; chemotherapy; circulating biomarkers; circulating microRNA; cohort; deep sequencing; density; design; epidemiologic data; follow-up; gene product; genetic variant; genome wide association study; improved; innovation; knock-down; microRNA biomarkers; molecular targeted therapies; mouse model; nanoparticle; neoplastic cell; novel; novel marker; novel therapeutics; outcome prediction; patient population; patient stratification; personalized cancer therapy; personalized medicine; pre-clinical; public health relevance; response; stem; survival prediction; therapeutic development; therapy outcome; treatment response

DESCRIPTION (provided by applicant): Non-small cell lung cancer (NSCLC) comprises over 80% of all lung cancer cases. More than two-thirds of NSCLC are diagnosed at a late stage, when current treatments are largely ineffective and only benefit a small portion of patients. Clinical variables alone cannot satisfactorily predict patients' outcomes. Biomarkers are urgently needed to assist in the patient stratification for personalized cancer therapy. Novel therapeutic agents are also highly desired to give patients alternative options after improved prediction of outcomes of treatments. The goals of this project are to identify germline genetic and circulating biomarkers related to microRNA (miRNA) as predictors of survival in late stage NSCLC patients. MiRNAs can regulate up to a third of human genes and play important roles in human carcinogenesis. The inherited genetic variants, mostly in the form of single nucleotide polymorphisms (SNPs), particularly SNPs in miRNA regulatory pathways (miR-SNPs), can also affect expression and/or function of their host and target genes. We propose to conduct a systematic study of miR-SNPs and circulating miRNAs in lung cancer. This proposal builds upon a lung cancer population at MD Anderson Cancer Center, with comprehensive epidemiological and clinical data and rich bio specimens. There are three specific aims: 1) to identify novel germline genetic loci in miR-SNPs that predict survival in patients with late-stage NSCLC. We will use a discovery and validation design with each phase consisting of 1,200 patients for platinum-treated patients; 2) to identify circulating miRNAs as predictors of survival in late- stage NSCLC patients using a testing and a validation set with a total of 800 plasma samples; and 3) to determine the potential disease-causative structural context, biological function, and molecular mechanism of the identified epigenetic miR-SNP and circulating miRNA biomarkers. This is a significant and innovative project incorporating epidemiology, inherited genetics, circulating biomarkers, biological and mechanistic studies, and preclinical therapeutic development.

描述（由申请人提供）：非小细胞肺癌（NSCLC）占所有肺癌病例的80%以上。超过三分之二的非小细胞肺癌是在晚期被诊断出来的，目前的治疗在很大程度上是无效的，只有一小部分患者受益。临床变量本身不能令人满意地预测患者的结果。迫切需要生物标志物来帮助患者分层以进行个性化癌症治疗。还高度期望新型治疗剂在改善治疗结果的预测后给予患者替代选择。该项目的目标是确定与microRNA（miRNA）相关的生殖系遗传和循环生物标志物作为晚期NSCLC患者生存的预测因子。miRNAs可以调控人类三分之一的基因，在人类肿瘤发生中发挥重要作用。遗传的遗传变异，主要以单核苷酸多态性（SNP）的形式，特别是miRNA调控途径中的SNP（miR-SNP），也可以影响其宿主和靶基因的表达和/或功能。我们建议对肺癌中miR-SNPs和循环miRNAs进行系统研究。该方案基于MD安德森癌症中心的肺癌人群，具有全面的流行病学和临床数据以及丰富的生物标本。有三个具体目标：1）鉴定miR-SNP中预测晚期NSCLC患者生存期的新生殖系遗传基因座。我们将使用发现和验证设计，每个阶段由1，200名接受铂类治疗的患者组成; 2）鉴定循环miRNA作为生存预测因子 在晚期NSCLC患者中使用具有总共800个血浆样品的测试和验证集;和3）确定鉴定的表观遗传miR-SNP和循环miRNA生物标志物的潜在致病结构背景、生物功能和分子机制。这是一个重要的创新项目，包括流行病学，遗传学，循环生物标志物，生物学和机制研究以及临床前治疗开发。