Joint Bioinformatics and Computational Core of the MARC
Joint Bioinformatics and Computational Core of the MARC
批准号:
10472687
负责人:
GARY S FIRESTEIN
金额:
$16.31万
依托单位国家:
美国
项目类别:
财政年份:
2018
资助国家:
美国
项目状态:
已结题
起止时间:
2018-09-01 至 2024-08-31
关键词:
ATAC-seqAcetylationAffectArthritisBioinformaticsBiologicalBiological AssayBiologyCaliforniaChromatinClinicalClinical InvestigatorCollaborationsComplexComplex AnalysisComputational ScienceComputer AnalysisComputing MethodologiesConsultConsultationsConsumptionDNA MethylationDataData AnalysesData ScienceData SetDevelopmentDiseaseEmbryoEnvironmental Risk FactorEpigenetic ProcessFibroblastsFutureGene ExpressionGenesGeneticGenomeGenomicsGoalsHistonesImageInflammationInstitutionJointsMalignant NeoplasmsMethodologyMethodsMicroRNAsNetwork-basedNucleic Acid Regulatory SequencesPathogenesisPathogenicityPathway AnalysisPathway interactionsPlayPredispositionResearchResearch DesignResearch PersonnelResourcesRheumatismRheumatoid ArthritisRheumatologyScienceServicesSeverity of illnessSystems BiologyTechnologyTimeTissuesUniversitiesValidationWorkalgorithmic methodologiesanalytical toolbasebiomarker signaturebiomarker validationbisulfite sequencingclinical phenotypecomplex datacomputerized toolsdesignepigenomicsgene interactiongene networkgenome sequencinggenome-widegenome-wide analysisinsightmultidimensional datamultiple omicsnovelpower analysisscience teacherskillsstructured datatooltranscription factortranscriptometranscriptome sequencingtranscriptomicswhole genome
中文摘要
联合生物信息学和预防性核心摘要
联合生物信息学和计算核心(JBC)将提供独特的计算工具和分析
它能够整合与关节炎和微环境相关的复杂多维数据集。
大多数学术机构提供标准的“组学”数据分析援助,如RNA-seq。然而,在这方面,
未来的研究将需要更多的计算能力来联合收割机结合许多数据类型,包括基因组学,
表观基因组学、成像和临床信息。核心拥有独特的专业知识,
共同主任的洞察力和计算技能,以提供对疾病发病机制的见解。这将
1)提供咨询和设计援助,使调查人员能够产生高
质量和可解释的数据; 2)使用UCSD开发的算法和计算方法,
来自不同技术的多维数据集;以及3)使用系统生物学提供更深入的
通过发展基因组网络了解疾病的发病机制。这些服务将允许
MARC调查人员通过无偏见的数据分析和鉴定,最大限度地发挥其研究价值
生物学验证的非明显目标。
英文摘要
JOINT BIOINFORMATICS AND COMPUTATIONAL CORE ABSTRACT
The Joint Bioinformatics and Computational Core (JBC) will provide unique computational tools and analysis
that enables integration of complex multi-dimensional datasets related to arthritis and the microenvironment.
Most academic institutions provide standard analytic assistance with `omics data, such as RNA-seq. However,
future studies will require much more computational power to combine many data types, including genomics,
epigenomics, imaging and clinical information. The Core has unique expertise that leverages the biologic
insights and the computational skills of the co-directors to provide insights into disease pathogenesis. This will
be accomplished by 1) providing consultation and design assistance so that investigators can generate high
quality and interpretable data; 2) using UCSD-developed algorithms and computational methods that integrate
multi-dimensional datasets derived from diverse technologies; and 3) using systems biology to provide deeper
understanding of disease pathogenesis through the development genomic networks. The services will allow
MARC investigators to maximize the value of their research through unbiased data analysis and identification
of non-obvious targets for biologic validation.
期刊论文(0)
专著(0)
科研奖励(0)
会议论文
Pathogenic role of ILC2 in rheumatoid arthritis
-
批准号:10269026
-
项目类别:
-
资助金额:$16.86万
-
财政年份:2020
-
负责人:GARY S FIRESTEIN
-
依托单位:
Pathogenic role of ILC2 in rheumatoid arthritis
-
批准号:10057498
-
项目类别:
-
资助金额:$20.8万
-
财政年份:2020
-
负责人:GARY S FIRESTEIN
-
依托单位:
Joint Bioinformatics and Computational Core of the MARC
-
批准号:10007639
-
项目类别:
-
资助金额:$16.5万
-
财政年份:2018
-
负责人:GARY S FIRESTEIN
-
依托单位:
Joint Bioinformatics and Computational Core of the MARC
-
批准号:10254254
-
项目类别:
-
资助金额:$16.44万
-
财政年份:2018
-
负责人:GARY S FIRESTEIN
-
依托单位:
Joint-location specific pathogenic pathways in rheumatoid arthritis
-
批准号:10647624
-
项目类别:
-
资助金额:$34.76万
-
财政年份:2018
-
负责人:GARY S FIRESTEIN
-
依托单位:
Joint-location specific pathogenic pathways in rheumatoid arthritis
-
批准号:9921295
-
项目类别:
-
资助金额:$34.65万
-
财政年份:2018
-
负责人:GARY S FIRESTEIN
-
依托单位:
Identifying synergistic therapeutic targets in RA using systems biology
-
批准号:9164023
-
项目类别:
-
资助金额:$20.46万
-
财政年份:2016
-
负责人:GARY S FIRESTEIN
-
依托单位:
UC San Diego Clinical and Translational Research Institute
-
批准号:10400206
-
项目类别:
-
资助金额:$922.81万
-
财政年份:2015
-
负责人:GARY S FIRESTEIN
-
依托单位:
UC San Diego Clinical and Translational Research Institute
-
批准号:10155614
-
项目类别:
-
资助金额:$904.88万
-
财政年份:2015
-
负责人:GARY S FIRESTEIN
-
依托单位:
UC San Diego Clinical and Translational Research Institute
-
批准号:9126629
-
项目类别:
-
资助金额:$838.35万
-
财政年份:2015
-
负责人:GARY S FIRESTEIN
-
依托单位:
UC San Diego Clinical and Translational Research Institute
-
批准号:9085716
-
项目类别:
-
资助金额:$796.32万
-
财政年份:2015
-
负责人:GARY S FIRESTEIN
-
依托单位:
UC San Diego Clinical and Translational Research Institute
-
批准号:10733080
-
项目类别:
-
资助金额:$21.38万
-
财政年份:2015
-
负责人:GARY S FIRESTEIN
-
依托单位:
UC San Diego Clinical and Translational Research Institute
-
批准号:10614992
-
项目类别:
-
资助金额:$922.81万
-
财政年份:2015
-
负责人:GARY S FIRESTEIN
-
依托单位:
UC San Diego Clinical and Translational Research Institute
-
批准号:10378449
-
项目类别:
-
资助金额:$14.55万
-
财政年份:2015
-
负责人:GARY S FIRESTEIN
-
依托单位:
High resolution DNA methylation signature in rheumatoid arthritis
-
批准号:8897270
-
项目类别:
-
资助金额:$34.1万
-
财政年份:2014
-
负责人:GARY S FIRESTEIN
-
依托单位:
Identification of key regulators in rheumatoid arthritis
-
批准号:10616695
-
项目类别:
-
资助金额:$58.54万
-
财政年份:2014
-
负责人:GARY S FIRESTEIN
-
依托单位:
High resolution DNA methylation signature in rheumatoid arthritis
-
批准号:8760169
-
项目类别:
-
资助金额:$34.1万
-
财政年份:2014
-
负责人:GARY S FIRESTEIN
-
依托单位:
Identification of key regulators in rheumatoid arthritis
-
批准号:10400059
-
项目类别:
-
资助金额:$59.06万
-
财政年份:2014
-
负责人:GARY S FIRESTEIN
-
依托单位:
Identification of key regulators in rheumatoid arthritis
-
批准号:9976210
-
项目类别:
-
资助金额:$60.5万
-
财政年份:2014
-
负责人:GARY S FIRESTEIN
-
依托单位:
CTSA INFRASTRUCTURE FOR AIDS RESEARCH
-
批准号:8365156
-
项目类别:
-
资助金额:$35.68万
-
财政年份:2011
-
负责人:GARY S FIRESTEIN
-
依托单位:
海外基金