Mutually Exclusive Protein Folding

互斥的蛋白质折叠

• 批准号: 7772644
• 负责人: STEWART N LOH
• 金额: $ 28.94万
• 依托单位: UPSTATE MEDICAL UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2004
• 资助国家: 美国
• 起止时间: 2004-07-01 至 2013-07-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7772644
• 关键词: Affinity; Allosteric Regulation; Amino Acid Sequence; Antibodies; Bacillus amyloliquefaciens ribonuclease; Binding; Binding Proteins; Biological; Biological Assay; Biological Process; Biosensor; Calcium; Camels; Cells; Chimera organism; Chimeric Proteins; Cleaved cell; Coupled; Coupling; Cultured Cells; Cyan Fluorescent Protein; Development; Distant; Dyes; Engineering; Enzymes; Escherichia coli; Evolution; Fluorescence Resonance Energy Transfer; Free Energy; Goals; Grant; Green Fluorescent Proteins; Guidelines; HIV; HIV Protease; Human; Hybridomas; Immunoglobulin Fragments; In Vitro; Lactamase; Ligand Binding; Ligands; Medical; Metals; Methods; Modification; Mutation; Output; PTF1 protein; Peptides; Phage Display; Point Mutation; Property; Proteins; Regulation; Ribonucleases; Ribose; Scaffolding Protein; Signal Transduction; Specificity; Structure; Surface; Techniques; Technology; Temperature; Tertiary Protein Structure; Testing; Therapeutic; Thermodynamics; Toxic effect; Toxin; Transgenic Animals; Variant; base; design; driving force; experience; fluorophore; in vitro testing; in vivo; interest; killings; molecular recognition; novel; novel therapeutics; protein folding; public health relevance; receptor; research study; scaffold; sensor; small molecule; sugar; yeast protein

DESCRIPTION (provided by applicant): The goal of this project is to develop mechanisms by which protein folding can be coupled to unfolding, in order to introduce allosteric control into proteins and enzymes. Two techniques are introduced for this purpose: mutually exclusive folding (MEF) and alternate frame folding (AFF). MEF uses the free energy stored in the folded structure of one domain to unfold another domain within the same molecule. The two domains cannot exist simultaneously in their native states; hence the molecule interconverts between two functional forms. By matching a receptor domain with an enzymatic or functional domain, one can create new molecules in which ligand binding causes a desired biological function. AFF is a novel mechanism for coupling binding to conformational change in a simple, predictable, and well-defined manner. It involves permutation of the amino acid sequence and partial sequence duplication. The resulting protein switches between native structures that are structurally similar, but possess different topologies. The driving force is provided by the universal linkage between ligand binding and protein folding. The conformational change is harnessed to a biological function or to an output signal. AFF can be implemented within a single protein or can be combined with MEF in a two- domain fusion to establish allosteric regulation. The aims will generate biosensors for calcium and sugars, protein scaffolds for development of versatile ("universal") sensors, a potent anti-HIV toxin, and a method for introducing conditional functionality to a protein of choice. These molecules will establish a framework for designing a wide variety of proteins with novel molecular recognition and therapeutic properties. PUBLIC HEALTH RELEVANCE: This project develops new mechanisms for introducing allosteric control into proteins. This technology is used to create proteins of medical significance (anti-HIV therapeutics) and biological interest (biosensors for metals, sugars, and other small molecules).

描述（由申请人提供）：本项目的目标是开发蛋白质折叠与去折叠耦合的机制，以便将变构控制引入蛋白质和酶。为此，引入了两种技术：互斥折叠（MEF）和交替帧折叠（AFF）。MEF利用储存在一个结构域折叠结构中的自由能来展开同一分子中的另一个结构域。这两个结构域不能同时存在于它们的天然状态;因此分子在两种功能形式之间相互转换。通过将受体结构域与酶或功能结构域匹配，可以产生新的分子，其中配体结合引起所需的生物学功能。AFF是一种以简单、可预测和明确定义的方式将结合与构象变化偶联的新机制。它涉及氨基酸序列的置换和部分序列重复。所产生的蛋白质在结构相似但具有不同拓扑结构的天然结构之间切换。驱动力由配体结合和蛋白质折叠之间的普遍联系提供。构象变化被利用于生物功能或输出信号。AFF可以在单个蛋白质内实现，或者可以在双结构域融合中与MEF组合以建立变构调节。这些目标将产生钙和糖的生物传感器，用于开发多功能（“通用”）传感器的蛋白质支架，一种有效的抗HIV毒素，以及一种将条件功能引入所选蛋白质的方法。这些分子将建立一个框架，用于设计各种具有新的分子识别和治疗特性的蛋白质。 公共卫生相关性：该项目开发了将变构控制引入蛋白质的新机制。这项技术被用于制造具有医学意义的蛋白质（抗HIV治疗剂）和生物学意义（金属，糖和其他小分子的生物传感器）。