DUET: Rapid dual-mode microscopy for quantitative slide-based renal fibrosis evaluation

DUET：快速双模式显微镜用于基于载玻片的肾纤维化定量评估

• 批准号: 10261643
• 负责人: Farzad Fereidouni
• 金额: $ 9.17万
• 依托单位: UNIVERSITY OF CALIFORNIA AT DAVIS
• 依托单位国家: 美国
• 财政年份: 2020
• 资助国家: 美国
• 起止时间: 2020-09-15 至 2021-09-14
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/10261643
• 关键词: Acute; Affect; Agreement; Algorithms; Allografting; Archives; Artificial Intelligence; Atrophic; Basement membrane; Biomedical Engineering; Biopsy; Buffaloes; Caring; Cessation of life; Chemicals; Chronic Kidney Failure; Cicatrix; Clinical; Collagen; Computer software; Computers; Consumption; Data; Data Science; Data Sources; Detection; Development; Diagnosis; Diagnostic; Disease; End stage renal failure; Ensure; Etiology; Evaluation; Fibrillar Collagen; Fibrosis; Fluorescence; Formalin; Goals; Gold; Hematoxylin and Eosin Staining Method; Histologic; Histology; Image; Image Analysis; Individual; Injury; Institution; Interobserver Variability; Kidney; Kidney Diseases; Kidney Failure; Laboratories; Link; Machine Learning; Manuals; Measures; Methods; Microscope; Microscopy; Natural History; Optics; Organ; Paraffin Embedding; Pathologist; Pathology; Pathway interactions; Patient-Focused Outcomes; Patients; Performance; Preparation; Procedures; Process; Property; Quantitative Microscopy; Recurrence; Renal Replacement Therapy; Renal function; Reproducibility; Research; Retrospective Studies; Running; Scientist; Severity of illness; Signal Transduction; Sirius Red F3B; Site; Slide; Staging; Stains; Standardization; System; Techniques; Technology; Testing; Therapeutic; Time; Tissue Embedding; Tissues; Trichrome stain method; Tubular formation; Universities; Validation; base; body system; clinical care; clinical practice; clinically significant; cohort; cost; cost effective; design; digital; digital pathology; follow-up; histological stains; instrument; instrumentation; kidney biopsy; kidney fibrosis; macromolecule; novel; outcome forecast; personalized diagnostics; predict clinical outcome; predictive modeling; prognostic; prognostic value; software development; stem; tool; transmission process

Contact PD/PI: Fereidouni, Farzad Abstract Kidneys, like other organs, have an inherent capacity to recover from acute injury; however, severe or recurrent injury can result in chronic kidney disease (CKD), the sequelae of which result in 82,000 deaths annually in the US alone. Regardless of the etiology of the initial injury, the common final pathway leading to- end stage renal disease is closely connected to fibrosis(excess or aberrant collagen distribution), one of the most important determinants of renal disease severity and prognosis. Histology is the gold standard for evaluation, typically through the use of histochemical stains such as trichrome and PAS that highlight the presence of collagens and basement membrane, respectively. Nevertheless, these stains are not completely specific, can be technically challenging to perform well and reproducibly, and thus contribute to interobserver variability and a concomitant decrease in diagnostic precision. Moreover, they also require the preparation of extra slides and additional staining procedures, and thus increase cost and can prolong the diagnostic process. We propose to optimize, deploy and test a new kind of microscope, DUET (DUal mode Emission and Transmission microscopy), developed at UC Davis, that will be a low-cost and very rapid solution for detection and digital characterization of the presence and distribution of collagen and other macromolecules, directly from standard formalin-fixed, paraffin-embedded hematoxylin and eosin-stained slides. Specifically, we will finalize the design of the hardware and software components of the instrument itself, validate imaging performance against standard histology and immunohistochemical stains for collagen and other components, and with the assistance of scientists at our partnering institutions (John Hopkins University and University of Buffalo) develop robust tools for analysis and quantitation of fibrosis. DUET instrument hardware will be shared with JHU to ensure that the methods are technically reproducible across multiple sites. The application leverages the expertise across three institutions in optics, biomedical engineering, renal pathology and novel artificial intelligence approaches. The goal of the project is development and validation of DUET, which promises to be a robust, inexpensive and practical approach for the rapid and accurate evaluation of fibrosis, extensible to other renal pathologies, and indeed across other organs systems, with significant positive impact on disease research, clinical practice, and patient outcomes. Page 6 Project Summary/Abstract

联系PD/PI：Fereidouni，Farzad 摘要 肾脏与其他器官一样，具有从急性损伤中恢复的固有能力;然而，严重或 复发性损伤可导致慢性肾病（CKD），其后遗症导致82，000人死亡 每年仅在美国。不管最初损伤的病因是什么，最终导致- 终末期肾病与纤维化（过量或异常的胶原蛋白分布）密切相关，纤维化是最常见的疾病之一。 肾脏疾病严重程度和预后的最重要决定因素。组织学是金标准， 评估，通常通过使用组织化学染色，如三色和PAS，突出了 分别存在胶原和基底膜。然而，这些污点并不完全是 具体来说，在技术上很难表现良好和可重复，因此有助于观察者之间的交流。 变异性和伴随的诊断精度降低。此外，它们还需要准备 额外的载玻片和额外的染色程序，从而增加了成本，并可能延长诊断过程。 我们建议优化，部署和测试一种新的显微镜，DUET（双模式发射和 透射显微镜），在加州大学戴维斯分校开发，这将是一个低成本和非常快速的检测解决方案 以及胶原蛋白和其他大分子的存在和分布的数字表征， 来自标准福尔马林固定、石蜡包埋的苏木精和伊红染色的载玻片。具体来说，我们将 完成仪器本身的硬件和软件组件的设计，验证成像 针对胶原蛋白和其他成分的标准组织学和免疫组织化学染色的性能， 并在我们的合作机构（约翰霍普金斯大学和密歇根大学）的科学家的协助下， 布法罗）开发了用于纤维化分析和定量的强大工具。DUET仪器硬件将共享 与JHU合作，以确保方法在多个地点的技术重现性。 该应用程序利用了光学，生物医学工程，肾脏和肾脏三个机构的专业知识。 病理学和新的人工智能方法。该项目的目标是开发和验证 DUET有望成为一种强大，廉价和实用的方法，用于快速准确地 纤维化的评价，可扩展到其他肾脏病理，实际上跨越其他器官系统， 对疾病研究、临床实践和患者结局产生重大积极影响。 第6页 项目总结/摘要