Nuclear Organization of RNA Polymerase III Transcription

RNA 聚合酶 III 转录的核组织

• 批准号: 7826939
• 负责人: DAVID R ENGELKE
• 金额: $ 29.65万
• 依托单位: UNIVERSITY OF MICHIGAN AT ANN ARBOR
• 依托单位国家: 美国
• 财政年份: 2008
• 资助国家: 美国
• 起止时间: 2008-07-01 至 2012-04-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7826939
• 关键词: 7SL RNA; Adverse effects; Affect; Alu Elements; Area; Behavior; Binding; Cell Cycle; Cell Nucleolus; Cell Nucleus; Cells; Chromosome Mapping; Chromosomes; Chromosomes, Human, Pair 16; Complex; DNA; DNA Packaging; DNA Polymerase II; DNA Repair; Development; Elements; Employee Strikes; Environment; Enzymes; Eukaryota; Event; Fungal Genome; Gene Cluster; Gene Order; Genes; Genetic; Genetic Recombination; Genetic Transcription; Genome; Goals; Human; Human Genome; In Vitro; Indium; Individual; Lead; Life; Malignant Neoplasms; Mammalian Cell; Mammals; Maps; Mediating; Metabolic; Microtubules; Mitotic Chromosome; Molecular; Molecular Genetics; Mus; Nature; Nuclear; Pathway interactions; Physical condensation; Polymerase; Process; Proteins; RNA Polymerase II; RNA Polymerase III; RNA Processing; Regulation; Research; Resolution; Retrieval; Retrotransposon; Role; Saccharomyces cerevisiae; Saccharomycetales; Short Interspersed Nucleotide Elements; Signal Transduction; Site; Small RNA; Spatial Behavior; Staging; Tandem Repeat Sequences; Testing; Transcriptional Regulation; Transfer RNA; Vertebrates; Yeasts; chromatin immunoprecipitation; condensin; in vivo; insight; mutant; promoter; protein complex; public health relevance; rRNA Genes; research study; response; segregation; tool; ultra high resolution; vertebrate genome

DESCRIPTION (provided by applicant): Genetic information is usually represented as linear arrays on chromosomes, yet nuclear DNA exists in a highly compacted form in which access to individual genes must be considered as a three-dimensional problem. Cytological evidence for a limited number of loci in several eukaryotes has suggested that localization of at least some genes is related to the transcriptional activity of the genes, and that this positioning can change in response to metabolic and developmental signals. Using the budding yeast, Saccharomyces cerevisiae, we have recently shown that the 275 tRNA genes, although widely scattered in the linear genome, are gathered near the nucleolus throughout the cell cycle. This clustering of the tRNA genes, while potentially advantageous in terms of RNA polymerase III (pol III) transcriptional regulation and an ordered pre-Trna processing pathway, has striking implications for spatial organization of much of the yeast genome. The clustering is pol III transcription-dependent, and affects both recombinations between tRNA genes and nearby transcription by RNA polymerase II. In preliminary studies we have now shown that nucleolar tRNA gene localization is a two step process, with condensin-dependent clustering of the tRNA genes separable from microtubule-dependent localization of the clusters to the nucleolus. The near-term goal of this project is to characterize the mechanisms of this large-scale organization of the individual tRNA genes in yeast, to take advantage of the molecular genetic tools. In the longer term we will also investigate whether this phenomenon affects the behavior of RNA polymerase III transcription units in mammals. Genomes from humans and other vertebrates contain not only hundreds of tRNA genes, but hundreds of thousands of short interspersed DNA elements (SINEs) with tRNA-class promoters. Some of these short interspersed DNA elements (SINEs) are known to influence both nearby transcription by RNA polymerase II and recombination events that are associated with developmental abnormalities and cancers. We anticipate that understanding the spatial behavior of pol III transcription units could provide broad insights into constraints on genome organization and regulation. PUBLIC HEALTH RELEVANCE: DNA in living cells is extremely condensed and packaged in a highly organized fashion. This packaging facilitates regulated retrieval of genetic information and affects DNA recombination events that can lead to cancers and developmental abnormalities. We have identified a type of abundant DNA element, distributed throughout genomes of higher cells, that both encodes small RNAs and serves as a three-dimensional organization signal. We are investigating the molecular mechanisms of this organization and the nature of the resulting DNA packaging.

描述（由申请人提供）：遗传信息通常表示为染色体上的线性阵列，但核DNA以高度紧凑的形式存在，其中访问单个基因必须被视为三维问题。几种真核生物中有限数量的基因座的细胞学证据表明，至少一些基因的定位与基因的转录活性有关，并且这种定位可以响应代谢和发育信号而改变。使用芽殖酵母，酿酒酵母，我们最近已经表明，275 tRNA基因，虽然广泛分散在线性基因组中，在整个细胞周期中聚集在核仁附近。tRNA基因的这种聚类，虽然在RNA聚合酶III（pol III）转录调控和有序的前tRNA加工途径方面具有潜在的优势，但对大部分酵母基因组的空间组织具有显著的影响。聚簇是pol III转录依赖性的，并且影响tRNA基因之间的重组和RNA聚合酶II的附近转录。在初步的研究中，我们现在已经表明，核仁tRNA基因定位是一个两步的过程，与凝聚素依赖的集群的tRNA基因的可分离的微管依赖的集群的定位到核仁。该项目的近期目标是描述酵母中单个tRNA基因大规模组织的机制，以利用分子遗传工具。 从长远来看，我们还将研究这种现象是否会影响哺乳动物中RNA聚合酶III转录单位的行为。来自人类和其他脊椎动物的基因组不仅包含数百个tRNA基因，而且包含数十万个具有tRNA类启动子的短散布DNA元件（西内斯）。已知这些短散布DNA元件（西内斯）中的一些影响RNA聚合酶II的附近转录和与发育异常和癌症相关的重组事件。我们预计，了解pol III转录单位的空间行为可以提供广泛的见解基因组组织和调控的约束。公共卫生相关性：活细胞中的DNA是高度浓缩的，并以高度组织的方式包装。这种包装促进了遗传信息的调控检索，并影响可能导致癌症和发育异常的DNA重组事件。我们已经确定了一种丰富的DNA元件，分布在整个高等细胞的基因组中，既编码小RNA，又作为三维组织信号。我们正在研究这种组织的分子机制以及由此产生的DNA包装的性质。