mDpy-30, intracellular protein transport, and histone methylation

mDpy-30、细胞内蛋白质转运和组蛋白甲基化

• 批准号: 8054751
• 负责人: DZWOKAI Z MA
• 金额: $ 21.11万
• 依托单位: UNIVERSITY OF CALIFORNIA SANTA BARBARA
• 依托单位国家: 美国
• 财政年份: 2010
• 资助国家: 美国
• 起止时间: 2010-04-02 至 2014-01-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8054751
• 关键词: Adhesions; Adopted; Affect; Appetitive Behavior; Biochemical; Biological Assay; Biotinylation; Caenorhabditis elegans; Catalytic Domain; Cell Adhesion; Cell Nucleus; Cells; Chromatin Structure; Chronic; Communication; Complex; Coupled; Cytoplasm; Cytosol; Data; Defect; Development; Disease; Embryonic Development; Endosomes; Essential Genes; Event; Exhibits; Food; Future; Gene Expression; Gene Expression Regulation; Gene Targeting; Genes; Genetic Transcription; Goals; Golgi Apparatus; Guanine Nucleotide Exchange Factors; Guanosine Triphosphate Phosphohydrolases; Histone H3; Histone-Lysine N-Methyltransferase; Histones; Image; Image Analysis; Immigration; Immunologic Surveillance; Inflammation; Integrins; Link; Lysine; Mediating; Membrane Protein Traffic; Methods; Methylation; Methyltransferase; Microarray Analysis; Modeling; Modification; Molecular; Neoplasm Metastasis; Nuclear; Organism; Orthologous Gene; Partner in relationship; Pathway Analysis; Pathway interactions; Peptides; Physiological; Play; Process; Proteins; RNA Interference; Recruitment Activity; Recycling; Research; Role; Site; Sorting - Cell Movement; Staging; Surface; Testing; Time; Tissue Engineering; Vascular Diseases; Wound Healing; base; cell behavior; cell motility; chromatin immunoprecipitation; effective therapy; histone modification; human IGF2R protein; human disease; infancy; insight; interest; intracellular protein transport; migration; novel; overexpression; protein transport; public health relevance; syntaxin 6; therapeutic target; tool; trafficking; trans-Golgi Network; tumor

DESCRIPTION (provided by applicant): The broad goal of this proposal is to investigate the coordination or communication of intracellular compartments. Specifically, we will investigate whether and how a subunit of the histone modification machinery coordinates endosomal trafficking and gene transcription. In this proposal we provide evidence that a subunit of the histone H3 lysine 4 methyltransferase complex (H3K4MT), mDpy-30 (the mammalian ortholog of Caenorhabditis elegans Dpy-30 protein), resides in both the nucleus and the cytoplasm, the latter of which is enriched at the trans-Golgi network (TGN). Based on our preliminary data, we hypothesize that the cytoplasmic/TGN pool of mDpy-30 and its associated protein restricts specific adhesion/migration proteins from being recycled to cell protrusions following their internalization, whereas nuclear mDpy-30 and its interacting proteins exert a similar effect by modulating the transcription of key genes that regulate endosomal trafficking and cell adhesion/migration. This hypothesis will be independently tested, as follows, by two aims: Aim 1 is intended to utilize imaging and biochemical methods to elucidate the role of cytoplasmic/TGN mDpy-30 and its associated proteins in endosomal trafficking using CIMPR and 21 integrin as model cargo proteins. Aim 2 employs biochemical tools, quantitative real-time PCR and chromatin immunoprecipitation to investigate the role of nuclear mDpy-30 and its interacting proteins in regulating expression of specific genes involved in endosomal recycling and adhesion/migration using syntaxin 6 and 21 integrin as two model target genes. We will also adopt a microarray approach in combined with the pathway analysis and quantitative real-time PCR to identify other genes regulated by mDpy-30. Research proposed here will advance our understanding of whether and how a cell coordinates the endosomal transport in the cytosol with gene regulation in the nucleus via one type of histone methylation. Little is known about the relationship between the function of TGN/endosomes and the gene expression in the nucleus. Our study is expected to provide more insight into this question. Moreover, although H3K4 methylation is essential for gene regulation, the physiological roles of this modification remain much less understood. In this regard, we anticipate that our proposed research will elucidate a novel function of H3K4 methylation or H3K4MT in trafficking/adhesion/migration. Finally, results obtained from this study should set the stage for future mechanistic studies to decipher the cellular network mediated by mDpy-30 and its associated proteins to control cell adhesion/migration in physiological as well as pathological states. Cell movement is a process fundamental to the viability of organisms. In simple organisms, cell locomotion primarily functions in mating and food searching behaviors. In complex organisms, cell locomotion is a tightly controlled process that plays an essential role in many physiological events, including embryonic development, tissue engineering, wound healing, immune surveillance, etc. The deregulation of cell locomotion often leads to serious consequences such as developmental defects, vascular diseases, immunological deficiency, chronic inflammation, as well as tumor metastasis. Thus, it is of no surprise that regulators of this cell behavior are of great interest as potential therapeutic targets. In this aspect, our research might also provide more potential targets for the development of effective treatments for diseases associated with cell migration. PUBLIC HEALTH RELEVANCE: This proposal seeks to investigate the coordination of protein trafficking and gene expression. Covalent modifications of histones allow a cell to modulate the transcription of genes and aberrant histone modifications have been associated with a variety of pathological conditions. One form of histone modification involves the methylation of specific lysine residues within histones H3 and H4 by histone lysine methyltransferase complexes. We have found that, mDpy-30 (the mammalian ortholog of Caenorhabditis elegans Dpy-30 protein), a subunit of the histone H3 lysine 4 methylation machinery, resides at both the nucleus and the Golgi apparatus, the latter of which is known to play a central role in protein sorting activities within a cell. This proposal aims to elucidate whether this dual localization of mDpy-30 represents a cellular mechanism to coordinate protein transport at the Golgi apparatus with gene transcription in the nucleus. While a fundamental role of histone methylation in chromatin structure and function has been firmly established, the research on how histone methylation is coupled to other cellular events in the cytosol is only in its infancy. We expect that our studies will unmask a link between histone methylation and membrane trafficking.

描述（由申请人提供）：本提案的总体目标是研究细胞内区室的协调或交流。具体来说，我们将研究组蛋白修饰机制的一个亚基是否以及如何协调内体运输和基因转录。在这个提议中，我们提供证据表明，组蛋白H3赖氨酸4甲基转移酶复合物（H3K4MT）的一个亚基mDpy-30（秀丽隐杆线虫Dpy-30蛋白的哺乳动物同源物）存在于细胞核和细胞质中，后者在反式高尔基网络（TGN）中富集。根据我们的初步数据，我们假设mDpy-30的细胞质/TGN池及其相关蛋白在内化后限制特异性粘附/迁移蛋白被循环到细胞突起，而核mDpy-30及其相互作用蛋白通过调节调节内体运输和细胞粘附/迁移的关键基因的转录发挥类似的作用。这一假设将通过以下两个目标进行独立测试：目标1旨在利用成像和生化方法阐明细胞质/TGN mDpy-30及其相关蛋白在使用CIMPR和21整合素作为模型货物蛋白的内体运输中的作用。Aim 2采用生化工具、实时定量PCR和染色质免疫沉淀，以syntaxin 6和21整合素为模型靶基因，研究核mDpy-30及其相互作用蛋白在调节参与内体循环和粘附/迁移的特定基因表达中的作用。我们还将采用微阵列方法结合通路分析和实时定量PCR来鉴定mDpy-30调控的其他基因。这里提出的研究将促进我们对细胞是否以及如何通过一种组蛋白甲基化协调细胞质内体转运与细胞核中的基因调控的理解。TGN/核内体的功能与细胞核内基因表达的关系尚不清楚。我们的研究有望为这个问题提供更多的见解。此外，尽管H3K4甲基化对基因调控至关重要，但这种修饰的生理作用仍然知之甚少。在这方面，我们预计我们提出的研究将阐明H3K4甲基化或H3K4MT在运输/粘附/迁移中的新功能。最后，本研究的结果应该为未来的机制研究奠定基础，以破译由mDpy-30及其相关蛋白介导的细胞网络，在生理和病理状态下控制细胞粘附/迁移。细胞运动是生物体生存的基本过程。在简单的生物体中，细胞运动主要在交配和寻找食物行为中起作用。在复杂生物体中，细胞运动是一个受到严格控制的过程，在许多生理事件中起着重要作用，包括胚胎发育、组织工程、伤口愈合、免疫监视等。细胞运动失调往往导致发育缺陷、血管疾病、免疫缺陷、慢性炎症以及肿瘤转移等严重后果。因此，毫不奇怪，这种细胞行为的调节因子作为潜在的治疗靶点是非常有趣的。在这方面，我们的研究也可能为开发与细胞迁移相关的疾病的有效治疗提供更多的潜在靶点。