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An Alternative Strategy for Macromolecular Crystallization

大分子结晶的替代策略

基本信息

批准号：
8133369
负责人：
ALEXANDER MCPHERSON
金额：
$ 29.84万
依托单位：
UNIVERSITY OF CALIFORNIA-IRVINE
依托单位国家：
美国
项目类别：
财政年份：
2008
资助国家：
美国
起止时间：
2008-09-15 至 2013-08-31
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/8133369
关键词：
Acute Address Area Automobile Driving Binding Biological Chemicals Crystallization Dependence Development Drug Formulations Electrostatics Grouping Growth Hydrogen Bonding Individual Investigation Laboratories Left Literature Macromolecular Complexes Medical Membrane Glycoproteins Membrane Proteins Methods Molecular Biology Molecular Conformation Molecular Models Nucleic Acids Outcome Play Probability Process Proteins Reagent Research Research Personnel Resources Role Sampling Science Screening procedure Set protein Solubility Solvents Structure Techniques Testing Time Translating Viral Proteins Virus Water Work X ray diffraction analysis X-Ray Crystallography X-Ray Diffraction base crosslink experience innovation macromolecule molecular modeling novel novel strategies protein complex research study small molecule structural biology structural genomics success

项目摘要

DESCRIPTION (provided by applicant): A clear dependence of structural biology on the crystallization of proteins, nucleic acids, viruses, and other macromolecular complexes has developed, as the vast majority of molecular models are now derived from X-ray crystallography. Crystal growth has come to play a crucial role in the entire enterprise of structure determination in the laboratories of both individual investigators, and in large structural genomics centers. The dependence is particularly acute with regard to the more intractable macromolecules such as membrane proteins and glycoproteins. Current approaches to macromolecular crystallization, while successful in perhaps 40% of cases, have not proven themselves able to successfully address many of the most biologically and medically significant problems. We propose to develop an alternate strategy for the crystallization of macromolecules that does not, like current methods, depend on the optimization of traditional variables such as pH and precipitant concentration, but is based on the hypothesis that many conventional small molecules might establish stabilizing, intermolecular, non covalent crosslinks in crystals, and thereby promote lattice formation. To test the hypothesis, we carried out preliminary experiments encompassing 18,240 crystallization trials using 81 different proteins, and 200 chemical compounds. Statistical analysis of the results demonstrates the validity of the idea. In addition, we have also conducted X-ray diffraction analyses of some of the crystals grown in the experiments. These clearly show incorporation of the conventional molecules into the protein crystal lattices, and they further validate the underlying hypothesis. We propose to extend the investigations to include a broader and more diverse set of proteins, including membrane proteins and macromolecular complexes, an expanded search of conventional and biologically active small molecules, and a wider range of precipitants. The strategy proposed here is essentially orthogonal to current approaches and has an objective of doubling the success rate of today.

描述（由申请人提供）：结构生物学对蛋白质、核酸、病毒和其他大分子复合物结晶的明显依赖性已经发展，因为现在绝大多数分子模型都来自X射线晶体学。晶体生长已经在个体研究者的实验室和大型结构基因组学中心的整个结构测定事业中发挥了至关重要的作用。对于更难处理的大分子，如膜蛋白和糖蛋白，这种依赖性尤其严重。目前的大分子结晶方法虽然在大约40%的情况下是成功的，但还没有证明它们能够成功地解决许多最具生物学和医学意义的问题。我们建议开发一种替代策略的结晶大分子，不像目前的方法，依赖于传统的变量，如pH值和沉淀剂浓度的优化，但基于假设，许多传统的小分子可能会建立稳定的，分子间的，非共价交联的晶体，从而促进晶格形成。为了验证这一假设，我们进行了初步实验，包括使用81种不同蛋白质和200种化合物进行的18，240次结晶试验。结果的统计分析证明了这一想法的有效性。此外，我们还对实验中生长的一些晶体进行了X射线衍射分析。这清楚地表明了常规分子与蛋白质晶格的结合，并进一步验证了基本假设。我们建议扩大调查范围，包括更广泛和更多样化的蛋白质，包括膜蛋白和大分子复合物，扩大传统和生物活性小分子的搜索，以及更广泛的沉淀剂。这里提出的战略基本上与目前的方法正交，目标是将今天的成功率提高一倍。