Structural Basis for RNA Silencing by Human Argonaute2

人类 Argonaute2 沉默 RNA 的结构基础

• 批准号: 8708908
• 负责人: IAN JOHN MACRAE
• 金额: $ 36.01万
• 依托单位: SCRIPPS RESEARCH INSTITUTE, THE
• 依托单位国家: 美国
• 财政年份: 2013
• 资助国家: 美国
• 起止时间: 2013-08-01 至 2017-05-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8708908
• 关键词: Architecture; Area; Binding; Biochemical; Biochemistry; Biology; Brain; Cells; Complex; Crystallography; DNA; Development; Distant; Enzymes; Family; Gene Silencing; Genes; Germ Cells; Glycine; Goals; Guide RNA; Human; Human Biology; In Vitro; Length; Light; Longevity; Maintenance; Mediating; Messenger RNA; MicroRNAs; Modeling; Molecular; Mutation; N-terminal; Names; Nucleotides; Pathway interactions; Penetrance; Plant Roots; Play; Positioning Attribute; Process; Protein Family; Proteins; RNA; RNA Binding; RNA Interference; RNA-Binding Proteins; RNA-Induced Silencing Complex; Recruitment Activity; Regulatory Pathway; Repression; Research; Resolution; Role; Site; Small Interfering RNA; Small RNA; Stem Cell Development; Structure; Testing; Therapeutic; Therapeutic Human Experimentation; Tissues; Tryptophan; Work; base; cancer prevention; design; human disease; improved; in vivo; insight; knock-down; member; positional cloning; programs; public health relevance; research study; therapeutic development; tool; tumor progression

DESCRIPTION (provided by applicant): RNA silencing refers to a group of widespread gene-regulatory pathways deeply rooted in nearly every facet of human biology, including brain development, stem-cell and germ-line maintenance and cancer progression. At the molecular level, all RNA silencing pathways, such as the microRNA (miRNA) regulatory pathway, are mediated by a specialized family of RNA-binding proteins named Argonaute. Argonaute proteins are uniquely capable of binding small regulatory RNAs and using the encoded sequence information to locate and silence complementary target RNAs. The versatility and power of RNA silencing arises from the fact that Argonaute can be loaded with a small RNA of any sequence and thus can be programmed to target any RNA for silencing. However, despite the importance of Argonaute in human biology and the as-of-yet untapped therapeutic potential, a detailed structural understanding of Argonaute is lacking. Indeed, information relating the structure of Argonaute to its functions is limited, derived either from distant, bacterial forms of the enzyme, which employ DNA guide molecules, or from isolated domains of eukaryotic forms. The contribution of the proposed research will provide high- resolution structures and functional analyses of full-length human Argonaute2 (Ago2). The overarching goal of this proposal is to understand three key interactions of Ago2 on a detailed structural and mechanistic level: (1) guide RNA binding; (2) target RNA recognition; and (3) the binding of the necessary accessory factor TNRC6. In preliminary work, the structure of Ago2 has already been determined and will serve as the launching platform for the studies proposed here. In Aim 1, a combination of structural and biochemical approaches will be used to determine how Ago2 binds guide RNAs and positions them for efficiently identifying target RNAs. This work will provide structural insights for the rational design of improved siRNAs. In Aim 2, a similar approach will be taken to understand the mechanism by which Ago2 recognizes target RNAs. These studies will provide a structural basis for the empirical miRNA targeting "rules" developed by other labs and open new avenues for manipulating these RNAs for both research and therapeutic purposes. In Aim 3, the structural basis for the association of Ago2 with TNRC6 will be determined. These results will define the general principles that guide the assembly of the massive complexes required for RNA silencing in vivo. Combined, these structural and functional studies will provide comprehensive mechanistic insights into one of the most fundamental-but poorly understood-components of RNA silencing in humans.

描述（由申请人提供）：RNA沉默是指一组广泛的基因调控途径，深深植根于人类生物学的几乎每个方面，包括大脑发育，干细胞和生殖系维持以及癌症进展。在分子水平上，所有的RNA沉默途径，如microRNA（miRNA）调节途径，都是由一个名为Argonaute的RNA结合蛋白家族介导的。Argonaute蛋白独特地能够结合小的调节RNA并使用编码的序列信息来定位和沉默互补靶RNA。RNA沉默的多功能性和强大性源于Argonaute可以装载任何序列的小RNA，因此可以编程以靶向任何RNA进行沉默。然而，尽管Argonaute在人类生物学中的重要性和尚未开发的治疗潜力，但缺乏对Argonaute的详细结构了解。事实上，Argonaute结构与其功能相关的信息是有限的，要么来自遥远的细菌形式的酶，其中使用DNA指导分子，要么来自真核形式的分离结构域。这项研究的贡献将提供全长人Argonaute 2（Ago 2）的高分辨率结构和功能分析。 该提案的总体目标是在详细的结构和机制水平上理解Ago 2的三个关键相互作用：（1）引导RNA结合;（2）靶RNA识别;和（3）必要的辅助因子TNRC 6的结合。在初步工作中，Ago 2的结构已经确定，并将作为这里提议的研究的启动平台。在目的1中，将使用结构和生物化学方法的组合来确定Ago 2如何结合引导RNA并定位它们以有效地鉴定靶RNA。这项工作将为改进siRNA的合理设计提供结构上的见解。在目标2中，将采用类似的方法来理解Ago 2识别靶RNA的机制。这些研究将为其他实验室开发的经验性miRNA靶向“规则”提供结构基础，并为操纵这些RNA用于研究和治疗目的开辟新途径。在目的3中，将确定Ago 2与TNRC 6缔合的结构基础。这些结果将定义指导体内RNA沉默所需的大规模复合物组装的一般原则。结合起来，这些结构和功能的研究将提供全面的机制的见解之一，最基本的，但了解甚少，组成部分的RNA沉默在人类。