Advance Bioinformatics Core
Advance Bioinformatics Core
批准号:
9121601
负责人:
KATHERINE S. POLLARD
金额:
$13.47万
依托单位国家:
美国
项目类别:
财政年份:
2008
资助国家:
美国
项目状态:
未结题
起止时间:
2008-09-01 至
关键词:
Affinity ChromatographyAlgorithmsBioinformaticsCardiacDNADNA SequenceDNA-Protein InteractionDataData SetDatabasesDiffusionEmbryoGene ExpressionGenesGenus MenthaHeartHeart failureInstructionKnowledgeLiteratureMass Spectrum AnalysisMeasuresMethodsMolecularOntologyPathway interactionsProcessProteinsProteomicsRegulator GenesSourceStagingbasechromatin immunoprecipitationcombinatorialmembernovelprogramsprotein complexprotein protein interactiontooltranscription factortranscriptome sequencing
中文摘要
高级生物信息学核心将分析和整合来自多个来源的数据,例如,
亲和纯化后质谱(AP-MS),染色质免疫沉淀
随后进行DNA测序(ChlP-Seq)、通过RNA-Seq进行基因表达和其他方法,
鉴定心脏分化中的生物学相关细胞通路和过程。它会让
使用新的程序,如MiST的AP-MS数据和其他算法开发的
Gladstone Bioinformatics Core准确分析ChIP-Seq和RNA-Seq数据。核心将
利用现有Gladstone生物信息学核心的专业知识,但专注于蛋白质-蛋白质
相互作用数据及其与其他基因调控数据集的整合,以建立组合
在心脏分化过程中控制基因表达的相互作用。
英文摘要
The Advanced Bioinformatics Core will analyze and integrate data from multiple sources, e.g.,
affinity purification followed by mass spectrometry (AP-MS), chromatin immunoprecipitation
followed by DNA sequencing (ChlP-Seq), gene expression by RNA-Seq and other methods to
identify biologically relevant cellular pathways and processes in cardiac differentiation. It will make
use of novel programs such as MiST for AP-MS data and other algorithms developed by the
Gladstone Bioinformatics Core to accurately analyze ChlP-Seq and RNA-Seq data. This core will
leverage the expertise in the existing Gladstone Bioinformatics Core but focus on protein-protein
interaction data and its integration with other gene regulatory datasets to establish combinatorial
interactions that control gene expression during cardiac differentiation.
期刊论文(0)
专著(0)
科研奖励(0)
会议论文
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海外基金