Structures of ion channel complexes

离子通道复合物的结构

• 批准号: RGPIN-2022-03021
• 负责人: Fedida, David
• 金额: $ 3.5万
• 依托单位: University of British Columbia
• 依托单位国家: 加拿大
• 项目类别: Discovery Grants Program - Individual
• 财政年份: 2022
• 资助国家: 加拿大
• 起止时间: 2022-01-01 至 2023-12-31
• 项目状态: 已结题
• 来源: https://www.nserc-crsng.gc.ca/ase-oro/Details-Detailles_eng.asp?id=743502
• 关键词: Structures; ion; channel; complexes

Program Long-term Objective: To better understand biophysical mechanisms of normal gating in potassium Kv7.1 (KCNQ1 or Q1) ion (K+) channels, complexed with calmodulin and KCNE subunits, E(x). We described the flexible stoichiometry, a novel inactivation mechanism, the allosteric gating of the Q1:E1 channel complex, and adopted state-of-the art cryo-EM technology during the prior granting period. Now, we will combine cryo-EM with cellular biophysical methods such as whole-cell and single channel patch recording, single oocyte fluorescence spectroscopy, unnatural amino acid crosslinking, and molecular dynamics (MD) simulation, to address four short-term objectives: 1) Molecular binding of inhibitors to rapidly activating Kv7.1 channels (Q1): Understanding mechanisms of action of inhibitors such as HMR1556, UCL2077, isofluranes, and their direct or allosteric binding will reveal how Q1 complexes operate and are inhibited. Ability to obtain high resolution cryo-EM structures of Q1, and eventually Q1:E(x) allows us to test structural and biophysical properties of different inhibitors complexed with various channel stoichiometries. 2) Cryo-EM and biophysics of activation gating in stoichiometrically fixed complexes of Q1+ E(x) channels: We will develop our existing Q1 cryo-EM methodology to resolve the first human Q1:E(1) structure. As Q1:E1 channels form the most important complexes of KCNQ1 and KCNE(x) (no structures obtained to date), such a structure would have wide scientific utility in the design and bioengineering of compounds that modulate channel complex activity. 3) Elucidation of resting-closed state Kv7.1 and Q1:E1 channel structures: Two vital structural elements subserve the function of voltage-activated K+ channels: the voltage sensor (VS) and the pore domain, but currently there are no structural representations of resting closed K+ channels with resting VS. We will use the E160R and/or E160R/R228E mutations to restrain channels in their resting states and obtain cryo-EM resolution of closed-state Q1:E(x) channel structures. 4) Markov and MD simulations of channel dynamics, drug binding/unbinding: Structural representations of the channel complexes will guide further cryo-EM studies and constrain Markov modeling and MD simulations of channel dynamics, to allow us to construct dynamic models of channel activation and inhibition. HQP: Our welcoming, rigorous, and diverse learning environment will help HQP acquire necessary skills to achieve independent and rewarding professional careers. Impact: Cryo-EM and biophysical studies of Q1 and Q1:E(x) inhibition and gating will uncover molecular events underlying function of these biological gatekeepers, and improve understanding of cell electrical activity. Knowledge will be disseminated via publication, invited conference, and this work is anticipated to lead to further NSERC-partnered opportunities, e.g., IRAP, Alliance, to generate further scientific, training, and economic opportunities.

项目长期目标：为了更好地理解钾Kv7.1（KCNQ 1或Q1）离子（K+）通道中正常门控的生物物理机制，与钙调蛋白和KCNE亚基E（x）复合。我们描述了灵活的化学计量，一种新的失活机制，Q1：E1通道复合物的变构门控，并在先前的授权期间采用了最先进的冷冻EM技术。现在，我们将联合收割机cryo-EM与细胞生物物理学方法相结合，如全细胞和单通道补丁记录，单卵母细胞荧光光谱，非天然氨基酸交联和分子动力学（MD）模拟，以解决四个短期目标：1）抑制剂与快速激活的Kv7.1通道（Q1）的分子结合：了解HMR 1556、UCL 2077、异氟烷等抑制剂的作用机制及其直接或变构结合，将揭示Q1复合物如何起作用和被抑制。能够获得Q1的高分辨率cryo-EM结构，最终Q1：E（x）允许我们测试与各种通道化学计量复合的不同抑制剂的结构和生物物理性质。2)Cryo-EM和Q1+ E（x）通道化学计量固定复合物中激活门控的生物物理学：我们将开发现有的Q1 cryo-EM方法来解析第一个人类Q1：E（1）结构。由于Q1：E1通道形成KCNQ 1和KCNE（x）的最重要的复合物（迄今为止没有获得结构），这样的结构在调节通道复合物活性的化合物的设计和生物工程中具有广泛的科学用途。3)静息闭合状态Kv7.1和Q1：E1通道结构的解析：两个重要的结构元件有助于电压激活K+通道的功能：电压传感器（VS）和孔域，但是目前还没有静息闭合K+通道与静息VS的结构表示。我们将使用E160 R和/或E160 R/R228 E突变来抑制处于静息状态的通道，并获得冷冻的K+通道。闭态Q1：E（x）沟道结构的EM分辨率。4)通道动力学的马尔可夫和MD模拟，药物结合/解结合：通道复合物的结构表示将指导进一步的冷冻EM研究，并约束通道动力学的马尔可夫建模和MD模拟，使我们能够构建通道激活和抑制的动态模型。HQP：我们热情、严谨和多样化的学习环境将帮助HQP获得必要的技能，以实现独立和有价值的职业生涯。影响：Q1和Q1：E（x）抑制和门控的Cryo-EM和生物物理学研究将揭示这些生物看门人功能的分子事件，并提高对细胞电活动的理解。知识将通过出版物、特邀会议传播，预计这项工作将带来更多与NSERC合作的机会，例如，IRAP，联盟，以创造更多的科学，培训和经济机会。