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中文摘要
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描述(由申请人提供):耶鲁大学,W.M.凯克生物技术资源实验室的MS &蛋白质组学核心开发了一种最先进的靶向蛋白质组学工作流程,该工作流程利用新兴的基于质谱的范例来验证和定量差异蛋白质表达,为临床样本中蛋白质生物标志物的识别和确认提供了潜在的重要诊断工具。由于耶鲁大学研究人员迅速接受了这项技术,我们正在申请AB SCIEX 6500 QTRAP混合三重四极杆线性离子阱质谱仪的资金,该质谱仪将致力于满足快速增长的对多种预选蛋白质水平进行定量的需求。此外,我们还需要一个自动进样器和UPLC系统,即沃茨公司生产的nanoACQUITY UPLC,该系统需要与MS连接,并在MS分析前提供自动样品处理和肽分离,从而能够对非常复杂的样品进行连续24/7分析。当所要求的仪器与我们内部开发的靶向蛋白质组学服务相结合时,所产生的平台将使我们能够大大扩展靶向蛋白质组学服务,以便他们能够支持由来自7个机构的27名研究人员指导的34个NIH资助的项目。(耶鲁大学、维克森林、达特茅斯学院、芝加哥大学、巴塞罗那大学、蒙大拿大学、和纽约大学)支持此应用程序。这些研究人员建议使用我们的针对性蛋白质组学服务来推进各种生物医学研究:贫血,无菌性脑膜炎,肌萎缩侧索硬化症,神经元发育和变性(阿尔茨海默氏症,帕金森氏症,朊病毒疾病),癌症(血管生成,乳头瘤病毒和黑色素瘤),糖尿病,药物成瘾,心血管疾病,肺气肿,艾滋病毒,疟疾,骨质疏松症,钩端螺旋体病,突触传递和囊性纤维化。所要求的仪器将使现有的和新的靶向蛋白质组LC-MRM分析能够提供给29个国家305个机构的461名耶鲁大学和574名非耶鲁大学(共1,035名)主要研究人员,他们在2012年使用了凯克实验室提供的服务。这项研究的进展将促进如何最好地理解,预防,预防和治疗人类疾病的知识。所要求的6500 QTRAP质谱仪(MS)在耶鲁大学是独一无二的,并将提供给其他感兴趣的研究人员,因为它放置在一个核心设施,接受来自美国各地的样品。因此,6500 QTRAP MS将为耶鲁大学及其他地区的生物医学研究做出重大贡献。
英文摘要
DESCRIPTION (provided by applicant): The Yale University, W.M. Keck Biotechnology Resource Laboratory's MS & Proteomics Core has developed a state-of-the-art targeted proteomics workflow that utilizes an emerging mass spectrometry based paradigm for validating and quantitating differential protein expression that provides a potentially important diagnostic tool for identification and confirmation of protein biomarkers from clinical samples. Due to rapid acceptance of this technology from Yale investigators, we are requesting funding for an AB SCIEX 6500 QTRAP hybrid triple quadrupole-linear ion trap mass spectrometer, which would be devoted to meeting the very rapidly increasing need for quantifying the levels of multiple preselected proteins. In addition, we are also requesting an automated sample injector and UPLC system, the nanoACQUITY UPLC manufactured by Waters Corporation, that is needed to interface with the MS and that will provide automated sample handing and peptide separation prior to MS analysis, thus enabling continuous 24/7 analysis of very complex samples. When the requested instrumentation is combined with our in-house developed targeted proteomic service, the resulting platform will enable us to greatly expand targeted proteomics services so they can support the 34 NIH-funded projects directed by 27 investigators from 7 Institutions (Yale University, Wake Forest, Dartmouth College, University of Chicago, Universitat de Barcelona, University of Montana, and New York University) that support this application. These investigators propose to use our targeted proteomic service to advance diverse biomedical research on: Anemia, Aseptic meningitis, Amyotrophic lateral sclerosis, Neuronal development and Degenerative (Alzheimer's, Parkinson's , Prion Diseases), Cancer (angiogenesis, papillomaviruses, and Melanoma), Diabetes, Drug Addiction, Cardiovascular disease, Emphysema, HIV, Malaria, Osteoporosis, Leptospirosis, Synaptic Transmission and Cystic Fibrosis. The requested instrumentation would enable existing and new targeted proteome LC-MRM analyses to be made available to the 461 Yale and 574 non-Yale (1,035 total) principal investigators at 305 institutions in 29 countries who used services provided by the Keck Laboratory in 2012. Progress in this research will advance knowledge of how best to understand, prevent, prognose, and treat human diseases. The requested 6500 QTRAP mass spectrometer (MS) would be unique at Yale University, and would be available to other interested investigators due to its placement in a core facility that accepts samples from across the U.S. and (when needed to keep its instrumentation operating at capacity) from around the world. Thus, the 6500 QTRAP MS would significantly contribute to biomedical research at Yale University and beyond.
期刊论文(3)
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会议论文
DOI: 10.1093/braincomms/fcac103
发表时间: 2022
期刊: BRAIN COMMUNICATIONS
影响因子: 4.8
作者: [Kandigian, Savannah E., Ethier, Elizabeth C., Kitchen, Robert R., Lam, Tukiet T., Arnold, Steven E., Carlyle, Becky C.]
通讯作者: Carlyle, Becky C.
High Performance Computing Instrumentation for the Yale Center for Genome Analysis
  • 批准号:
    10416696
  • 项目类别:
  • 资助金额:
    $119.81万
  • 财政年份:
    2022
  • 负责人:
    SHRIKANT M MANE
  • 依托单位:
GeneChip Automation and MegAllele System for Microarray Analysis at Yale Univ.
  • 批准号:
    7125786
  • 项目类别:
  • 资助金额:
    $105.49万
  • 财政年份:
    2007
  • 负责人:
    SHRIKANT M MANE
  • 依托单位:
Yale Microarray Center for Research the Nervous System
  • 批准号:
    6936983
  • 项目类别:
  • 资助金额:
    $124.58万
  • 财政年份:
    2005
  • 负责人:
    SHRIKANT M MANE
  • 依托单位:
Yale Microarray Center for Research on the Nervous Syste
  • 批准号:
    7089114
  • 项目类别:
  • 资助金额:
    $125.33万
  • 财政年份:
    2005
  • 负责人:
    SHRIKANT M MANE
  • 依托单位:
国内基金
海外基金
新型F-18标记香豆素衍生物PET探针的研制及靶向Alzheimer's Disease 斑块显像研究
  • 批准号:
    81000622
  • 项目类别:
    青年科学基金项目
  • 资助金额:
    20.0万元
  • 批准年份:
    2010
  • 负责人:
    梁胜
  • 依托单位:
阿尔茨海默病(Alzheimer's disease,AD)动物模型构建的分子机理研究
  • 批准号:
    31060293
  • 项目类别:
    地区科学基金项目
  • 资助金额:
    26.0万元
  • 批准年份:
    2010
  • 负责人:
    郭亚芬
  • 依托单位:
跨膜转运蛋白21(TMP21)对引起阿尔茨海默病(Alzheimer'S Disease)的γ分泌酶的作用研究