GENCODE Management, Dissemination and Training

管理、传播和培训--项目摘要 GENCODE未来四年计划的管理、传播和培训将 在很大程度上延续了在当前项目中被发现成功的做法。主要的区别是 因为这项提议是项目向EMBL-EBI的过渡。的最终过渡日期。 WTSI哈瓦那团队定于2017年4月1日，与拟议资金的开始不谋而合 ，并将遵循以前的资源通知的有序过程 从WTSI到EMBL-EBI的过渡。随着技术转型的进行，我们将 从WTSI到EMBL-EBI的计算和软件基础设施将持续到2016年及年初 2017年，并为哈瓦那工作人员提供访客登录以在过渡前进行测试。工作人员和 物理过渡将在2017年发生。所有搬到EMBL-EBI的哈瓦那员工将获得 Embl合同的开始日期为2017年4月1日。在项目管理方面，科学的 咨询委员会(SAB)将继续就项目的各个方面提供咨询意见，包括 联合体的进展、优先事项、新技术、业务流程，并将 作为用户社区的代表。SAB将每年召开一次会议。一项研究 支助干事将在项目上以0.5FTE的速度部署，以组织SAB年度会议， 并确保合作伙伴之间定期举行会议和电话会议，以及 定期更新和报告。在访问方面，GENCODE的主要目标是定期的 发布注释；维护和扩展现有的GENCODE门户网站 (http://www.gencodegenes.org)向研究和临床社区提供信息 致力于人类和小鼠遗传学和基因组学；以及设计和实现 新的Web界面。注释将通过EnSembl和UCSC浏览器发布，如下所示 以及通过文件传输协议和超文本传输协议，以及跟踪枢纽。用于专用数据的GENCODE门户 下载和具体的项目新闻，将得到扩展，以提供深入的文档和 GENCODE联合体内使用的进程的详细信息。为了进一步帮助数据访问和 通过EnSembl网站发现，视觉上突出差异的新观点和 不同品系的小鼠在注释上的相似性将被开发出来。该公司的培训计划 GENCODE的下一阶段包括广泛的研讨会，讨论如何使用GENCODE注释， 如何使用GENCODE工具，以及如何向公共基因组档案提交注释。 还将通过电子邮件帮助台远程提供对用户的支持，在那里将提供查询 由请求跟踪器跟踪。

MANAGEMENT, DISSEMINATION AND TRAINING - PROJECT SUMMARY The management, dissemination and training planned for the next four years of GENCODE will largely continue the practices found to be successful in the current project. The major difference for this proposal is the transition of the project to EMBL-EBI. The date of final transition for the WTSI HAVANA team is set for 1 April 2017, coincident with the start of the proposed funding from this application, and will follow an orderly process informed by previous resource transitions from WTSI to EMBL-EBI. As the technical transition proceeds, we will move computational and software infrastructure from WTSI to EMBL-EBI through 2016 and early 2017, and provide HAVANA staff with guest logins to for testing before transition. The staff and physical transition will occur in 2017. All HAVANA staff moving to EMBL-EBI will be offered EMBL contracts with a start date of 1 April 2017. In terms of project management, the Scientific Advisory Board (SAB) will continue to provide advice on all aspects of the project, including progress, priorities, new technologies, operational processes of the consortium, and will also serve as representatives of the user community. The SAB will meet annually. A Research Support Officer will be deployed at 0.5 FTE on the project to organize the annual SAB meetings, and also to ensure regular meetings and teleconferences between the partners, as well as regular updates and reports. In terms of access, the major aims for GENCODE are regular releases of annotation; maintenance and extension of the existing GENCODE portal website (http://www.gencodegenes.org) providing information to the research and clinical community working on human and mouse genetics and genomics; and the design and implementation of new web interfaces. Annotation will be released through the Ensembl and UCSC browsers, as well as via FTP and HTTP, and Track Hubs. The GENCODE portal, used for dedicated data download and specific project news, will be expanded to provide in-depth documentation and details of the processes used within the GENCODE consortium. To further aid data access and discovery via the Ensembl website, new views of visually highlighting the differences and similarities in annotation for different strains of mice will be developed. The training plans for the next phase of GENCODE include extensive workshops, on the use of GENCODE annotation, how to use GENCODE tools, and how to submit annotation to the public genomic archives. Support for users will also be provided remotely by an email Helpdesk, where queries will be tracked by Request Tracker.