Chromosome-level genome assembly and annotation of eel goby (Odontamblyopus rebecca).
Chromosome-level genome assembly and annotation of eel goby (Odontamblyopus rebecca).
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DOI：
10.1038/s41597-024-02997-8
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发表时间：
2024-02-02
期刊：
影响因子：
9.8
通讯作者：
Li, Yongxin
中科院分区：
文献类型：
--
作者：
Lue, Zhenming;Yu, Ziwei;Luo, Wenkai;Liu, Tianwei;Wang, Yuzheng;Liu, Yantang;Liu, Jing;Liu, Bingjian;Gong, Li;Liu, Liqin;Li, Yongxin
The eel gobies fascinate researchers with many important features, including its unique body structure, benthic lifestyle, and degenerated eyes. However, genome assembly and exploration of the unique genomic composition of the eel gobies are still in their infancy. This has severely limited research progress on gobies. In this study, multi-platform sequencing data were generated and used to assemble and annotate the genome of O. rebecca at the chromosome-level. The assembled genome size of O. rebecca is 918.57 Mbp, which is similar to the estimated genome size (903.03 Mbp) using 17-mer. The scaffold N50 is 41.67 Mbp, and 23 chromosomes were assembled using Hi-C technology with a mounting rate of 99.96%. Genome annotation indicates that 53.29% of the genome is repetitive sequences, and 22,999 protein-coding genes are predicted, of which 21,855 have functional annotations. The chromosome-level genome of O. rebecca will not only provide important genomic resources for comparative genomic studies of gobies, but also expand our knowledge of the genetic origin of their unique features fascinating researchers for decades.
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影响因子：
5.6
作者：
Liu, Yantao;Liu, Tianwei;Wang, Yuzhen;Liu, Jing;Liu, Bingjian;Gong, Li;Lu, Zhenming;Liu, Liqin
通讯作者：
Liu, Liqin
影响因子：
9.8
作者：
Zhang, Kai;Huang, Yu;Zhang, Yuxuan;Liang, Rishen;Li, Qingqing;Li, Ruihan;Zhao, Xiaomeng;Bian, Chao;Chen, Yongnan;Wu, Jinhui;Shi, Qiong;Lin, Li
通讯作者：
Lin, Li
影响因子：
1.7
作者：
Jurka, J;Kapitonov, VV;Walichiewicz, J
通讯作者：
Walichiewicz, J
追踪非硬骨鱼射线鳍鱼类的脊椎动物着陆的遗传足迹。
影响因子：
64.5
作者：
Bi, Xupeng;Wang, Kun;Zhang, Guojie
通讯作者：
Zhang, Guojie
影响因子：
9.3
作者：
Durand NC;Shamim MS;Machol I;Rao SS;Huntley MH;Lander ES;Aiden EL
通讯作者：
Aiden EL