Updated guidelines for gene nomenclature in wheat.
Updated guidelines for gene nomenclature in wheat.
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DOI：
10.1007/s00122-023-04253-w
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发表时间：
2023-03-23
影响因子：
5.4
通讯作者：
Zhang, Y.
中科院分区：
文献类型：
--
作者：
Boden, S. A.;McIntosh, R. A.;Uauy, C.;Krattinger, S. G.;Dubcovsky, J.;Rogers, W. J.;Xia, X. C.;Badaeva, E. D.;Bentley, A. R.;Brown-Guedira, G.;Caccamo, M.;Cattivelli, L.;Chhuneja, P.;Cockram, J.;Contreras-Moreira, B.;Dreisigacker, S.;Edwards, D.;Gonzalez, F. G.;Guzman, C.;Ikeda, T. M.;Karsai, I;Nasuda, S.;Pozniak, C.;Prins, R.;Sen, T. Z.;Silva, P.;Simkova, H.;Zhang, Y.
在这里，我们提供了一套最新的小麦基因命名指南，该指南已得到小麦研究界的认可。在过去的十年中，小麦基因组资源激增，包括带有基因注释的参考和泛基因组组装，这为检测、鉴定和描述影响感兴趣性状的基因提供了新的机会。遗传信息的扩展支持了小麦研究界的发展，并催化了对控制重要农艺性状（如产量、病原体抗性、谷物品质和非生物胁迫耐受性）的基因的强烈兴趣。为了适应这些发展，我们提出了一套最新的小麦基因命名准则。这些指南可用于描述基于形态学或表型特征鉴定的基因座，或基于序列信息命名基因，例如与其他物种中表征的基因的相似性或编码蛋白质的生物化学性质。更新后的指南提供了一个灵活的系统，它不是过于规范，而是提供了小麦基因命名的结构和共同框架，可以扩展到相关的谷物物种。我们建议小麦研究界今后使用这些指南，以促进独立研究数据的整合，并允许更广泛和更有效地使用文本和数据挖掘方法，这将最终有助于进一步加快小麦研究和育种。在线版本包含补充材料，可通过10.1007/s 00122 -023-04253-w获得。
Here, we provide an updated set of guidelines for naming genes in wheat that has been endorsed by the wheat research community. The last decade has seen a proliferation in genomic resources for wheat, including reference- and pan-genome assemblies with gene annotations, which provide new opportunities to detect, characterise, and describe genes that influence traits of interest. The expansion of genetic information has supported growth of the wheat research community and catalysed strong interest in the genes that control agronomically important traits, such as yield, pathogen resistance, grain quality, and abiotic stress tolerance. To accommodate these developments, we present an updated set of guidelines for gene nomenclature in wheat. These guidelines can be used to describe loci identified based on morphological or phenotypic features or to name genes based on sequence information, such as similarity to genes characterised in other species or the biochemical properties of the encoded protein. The updated guidelines provide a flexible system that is not overly prescriptive but provides structure and a common framework for naming genes in wheat, which may be extended to related cereal species. We propose these guidelines be used henceforth by the wheat research community to facilitate integration of data from independent studies and allow broader and more efficient use of text and data mining approaches, which will ultimately help further accelerate wheat research and breeding. The online version contains supplementary material available at 10.1007/s00122-023-04253-w.
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影响因子：
46.9
作者：
Gaurav K;Arora S;Silva P;Sánchez-Martín J;Horsnell R;Gao L;Brar GS;Widrig V;John Raupp W;Singh N;Wu S;Kale SM;Chinoy C;Nicholson P;Quiroz-Chávez J;Simmonds J;Hayta S;Smedley MA;Harwood W;Pearce S;Gilbert D;Kangara N;Gardener C;Forner-Martínez M;Liu J;Yu G;Boden SA;Pascucci A;Ghosh S;Hafeez AN;O'Hara T;Waites J;Cheema J;Steuernagel B;Patpour M;Justesen AF;Liu S;Rudd JC;Avni R;Sharon A;Steiner B;Kirana RP;Buerstmayr H;Mehrabi AA;Nasyrova FY;Chayut N;Matny O;Steffenson BJ;Sandhu N;Chhuneja P;Lagudah E;Elkot AF;Tyrrell S;Bian X;Davey RP;Simonsen M;Schauser L;Tiwari VK;Randy Kutcher H;Hucl P;Li A;Liu DC;Mao L;Xu S;Brown-Guedira G;Faris J;Dvorak J;Luo MC;Krasileva K;Lux T;Artmeier S;Mayer KFX;Uauy C;Mascher M;Bentley AR;Keller B;Poland J;Wulff BBH
通讯作者：
Wulff BBH
影响因子：
13.8
作者：
Allen AM;Winfield MO;Burridge AJ;Downie RC;Benbow HR;Barker GL;Wilkinson PA;Coghill J;Waterfall C;Davassi A;Scopes G;Pirani A;Webster T;Brew F;Bloor C;Griffiths S;Bentley AR;Alda M;Jack P;Phillips AL;Edwards KJ
通讯作者：
Edwards KJ
影响因子：
30.8
作者：
Maccaferri, Marco;Harris, Neil S.;Cattivelli, Luigi
通讯作者：
Cattivelli, Luigi
影响因子：
64.8
作者：
Peng, JR;Richards, DE;Harberd, NP
通讯作者：
Harberd, NP
影响因子：
3.3
作者：
Dvorak, J.;Deal, K. R.;Luo, M. -C.
通讯作者：
Luo, M. -C.