Full genome sequencing of Corriparta virus, identifies California mosquito pool virus as a member of the Corriparta virus species.

Full genome sequencing of Corriparta virus, identifies California mosquito pool virus as a member of the Corriparta virus species.
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DOI:
10.1371/journal.pone.0070779
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发表时间:
2013
期刊:
影响因子:
3.7
通讯作者:
Mertens PP
Mertens PP
中科院分区:
综合性期刊3区
文献类型:
--
作者:
Belaganahalli MN;Maan S;Maan NS;Nomikou K;Guimera M;Brownlie J;Tesh R;Attoui H;Mertens PP

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Corriparta病毒(CORV)属呼肠孤病毒科环状病毒属,目前包含六种病毒株:Corriparta病毒MRM 1(CORV-MRM 1); CS 0109; V654; V370; Acado病毒和Jacareacanga病毒。然而,由于缺乏中和试验或参考基因组序列数据,因此无法进一步分析其血清群/种属内关系和鉴别个体血清型。我们报告了1960年在澳大利亚分离的CORV-MRM 1的全基因组序列数据。比较了该病毒基因组第1、2和8节(Seg-1、Seg-2和Seg-8)编码的保守聚合酶(VP 1)、亚核-壳“T2”和核-表面“T13”蛋白,表明该病毒与其它蚊传环状病毒属同一类群。然而,在CORV-MRM 1和加州蚊池病毒(CMPV)(1974年在美国分离的一种环状病毒)之间检测到最高水平的nt/aa序列同一性(Seg-2/T2中分别为75.9%/91.6%; Seg-8/T13中分别为77.6%/91.7%),表明它们属于相同的病毒物种。本文提供的数据将CMPV鉴定为Corriparta病毒种属的成员,并将有助于鉴定其他CORV分离株、诊断试验设计和流行病学研究。
The species Corriparta virus (CORV), within the genus Orbivirus, family Reoviridae, currently contains six virus strains: corriparta virus MRM1 (CORV-MRM1); CS0109; V654; V370; Acado virus and Jacareacanga virus. However, lack of neutralization assays, or reference genome sequence data has prevented further analysis of their intra-serogroup/species relationships and identification of individual serotypes. We report whole-genome sequence data for CORV-MRM1, which was isolated in 1960 in Australia. Comparisons of the conserved, polymerase (VP1), sub-core-shell ‘T2’ and core-surface ‘T13’ proteins encoded by genome segments 1, 2 and 8 (Seg-1, Seg-2 and Seg-8) respectively, show that this virus groups with the other mosquito borne orbiviruses. However, highest levels of nt/aa sequence identity (75.9%/91.6% in Seg-2/T2: 77.6%/91.7% in Seg-8/T13, respectively) were detected between CORV-MRM1 and California mosquito pool virus (CMPV), an orbivirus isolated in the USA in 1974, showing that they belong to the same virus species. The data presented here identify CMPV as a member of the Corriparta virus species and will facilitate identification of additional CORV isolates, diagnostic assay design and epidemiological studies.
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