PDBe: Protein Data Bank in Europe.

PDBe: Protein Data Bank in Europe.
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DOI:
10.1093/nar/gkt1180
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发表时间:
2014-01
影响因子:
14.9
通讯作者:
Kleywegt GJ
Kleywegt GJ
中科院分区:
生物学2区
文献类型:
--
作者:
Gutmanas A;Alhroub Y;Battle GM;Berrisford JM;Bochet E;Conroy MJ;Dana JM;Fernandez Montecelo MA;van Ginkel G;Gore SP;Haslam P;Hatherley R;Hendrickx PM;Hirshberg M;Lagerstedt I;Mir S;Mukhopadhyay A;Oldfield TJ;Patwardhan A;Rinaldi L;Sahni G;Sanz-García E;Sen S;Slowley RA;Velankar S;Wainwright ME;Kleywegt GJ

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欧洲蛋白质数据库(pdbe.org)是全球PDB联盟(wwPDB; wwpdb.org)的创始成员,因此积极参与大分子结构数据的沉积,注释,修复和传播,通过这种数据的单一全球档案,PDB。同样,PDBe是EMDatabank组织(emdatabank.org)的成员,该组织管理电子显微镜数据的EMDB存档。PDBe还开发工具,帮助生物医学科学界有效利用PDB和EMDB中的数据进行研究。在这里,我们描述了新的或改进的服务,包括更新的SIFTS映射到其他生物信息学资源,一个新的浏览器的PDB档案的基础上基因本体论(GO)注释,更新的分析核磁共振衍生结构,重新设计的搜索和浏览界面,以及新的或更新的可视化和验证工具EMDB条目。
The Protein Data Bank in Europe (pdbe.org) is a founding member of the Worldwide PDB consortium (wwPDB; wwpdb.org) and as such is actively engaged in the deposition, annotation, remediation and dissemination of macromolecular structure data through the single global archive for such data, the PDB. Similarly, PDBe is a member of the EMDataBank organisation (emdatabank.org), which manages the EMDB archive for electron microscopy data. PDBe also develops tools that help the biomedical science community to make effective use of the data in the PDB and EMDB for their research. Here we describe new or improved services, including updated SIFTS mappings to other bioinformatics resources, a new browser for the PDB archive based on Gene Ontology (GO) annotation, updates to the analysis of Nuclear Magnetic Resonance-derived structures, redesigned search and browse interfaces, and new or updated visualisation and validation tools for EMDB entries.
DOI: 10.1107/s0907444913001157
发表时间: 2013-05
期刊: Acta crystallographica. Section D, Biological crystallography
影响因子: --
作者:
Gutmanas A;Oldfield TJ;Patwardhan A;Sen S;Velankar S;Kleywegt GJ
通讯作者: Kleywegt GJ
DOI: 10.1093/nar/gkr948
发表时间: 2012-01
影响因子: 14.9
作者:
Hunter S;Jones P;Mitchell A;Apweiler R;Attwood TK;Bateman A;Bernard T;Binns D;Bork P;Burge S;de Castro E;Coggill P;Corbett M;Das U;Daugherty L;Duquenne L;Finn RD;Fraser M;Gough J;Haft D;Hulo N;Kahn D;Kelly E;Letunic I;Lonsdale D;Lopez R;Madera M;Maslen J;McAnulla C;McDowall J;McMenamin C;Mi H;Mutowo-Muellenet P;Mulder N;Natale D;Orengo C;Pesseat S;Punta M;Quinn AF;Rivoire C;Sangrador-Vegas A;Selengut JD;Sigrist CJ;Scheremetjew M;Tate J;Thimmajanarthanan M;Thomas PD;Wu CH;Yeats C;Yong SY
通讯作者: Yong SY
DOI: 10.1093/nar/gkr1048
发表时间: 2012-01
影响因子: 14.9
作者:
Dimmer EC;Huntley RP;Alam-Faruque Y;Sawford T;O'Donovan C;Martin MJ;Bely B;Browne P;Mun Chan W;Eberhardt R;Gardner M;Laiho K;Legge D;Magrane M;Pichler K;Poggioli D;Sehra H;Auchincloss A;Axelsen K;Blatter MC;Boutet E;Braconi-Quintaje S;Breuza L;Bridge A;Coudert E;Estreicher A;Famiglietti L;Ferro-Rojas S;Feuermann M;Gos A;Gruaz-Gumowski N;Hinz U;Hulo C;James J;Jimenez S;Jungo F;Keller G;Lemercier P;Lieberherr D;Masson P;Moinat M;Pedruzzi I;Poux S;Rivoire C;Roechert B;Schneider M;Stutz A;Sundaram S;Tognolli M;Bougueleret L;Argoud-Puy G;Cusin I;Duek-Roggli P;Xenarios I;Apweiler R
通讯作者: Apweiler R
DOI: 10.1093/nar/gkr1178
发表时间: 2012-01
影响因子: 14.9
作者:
Federhen S
通讯作者: Federhen S
DOI: 10.1023/b:jcam.0000046849.15132.72
发表时间: 2004-04-01
影响因子: 3.5
作者:
Oldfield, TJ
通讯作者: Oldfield, TJ