Interactive Multifunctional Confocal Image Analysis

交互式多功能共焦图像分析

基本信息

项目摘要

3D confocal microscopy is a widely used imaging method for optical analysis of small specimens, applied in numerous fields including life sciences, material science and information technology. Current systems mainly focus on specialized monomodal analysis which target either the measurement of the sample topology, the location of chemically labeled molecules, or the label-free analysis of chemical composition, to name a few. However, the interpretation of monomodal information is strongly bound to experts interpretation, as many of the confocal imaging techniques have a plethora of parameters influencing the detected signals. Even though investigated only in a very few exceptional cases, multifunctional or multimodal confocal analysis has a huge potential to provide a broader information basis and to stabilize interpretation ambiguities. In this project, we develop a combined setup consisting of a confocal Raman microspectroscopy (CRM) and a spatially resolved transient absorption technique (differential Confocal Absorption microscopy, dCAM) in conjunction with an effective and efficient visual analysis tool for the obtained multidimensional data sets. The complexity of the multimodal data requires novel scientific approaches for both, the experimental as well as for the data analysis and visualization perspective. In the first project phase we could accomplish the technical integration of the dCAM modality into our CRM microscopy system. The evaluation of the new system revealed an unexpectedly strong and stable dCAM signal with a 3D spatial resolution close to the theoretic minimum. One the analysis side, we accomplished a first system capable of performing an online visual analysis of monomodal CRM data sets.In the second project phase, the experimental part of the project will integrate time resolved dCAM measurements into CRM in order to explore simultaneously charge carrier, temperature dynamics and the chemical or crystalline microstructure on an adequate choice of optoelectronic materials and devices. The planned upgrade of the dCAM to a fourier-domain dCAM (fddCAM) will enable us to reconstruct the full time trace of the photo activated decay mechanisms. In parallel, the data analysis and visualization part will be further extended in order to extract the relevant information from the multimodal data sets and to allows for interactive visual analysis of the complex relations between different effect. This requires new techniques for hierarchical data management, user guidance and uncertainty visualization. Besides an intense collaboration in the context of common analysis questions, we will conduct several user studies in order to evaluate the usability and effectivity of the proposed methods for visual and analytical data exploration.
三维共焦显微镜是一种广泛应用于小样本光学分析的成像方法,广泛应用于生命科学、材料科学和信息技术等领域。目前的系统主要集中在专门的单峰分析,其目标要么是样品拓扑的测量,要么是化学标记分子的位置,要么是化学成分的无标记分析,仅举几例。然而,由于许多共焦成像技术具有影响检测信号的过多参数,因此对单峰信息的解释强烈地受专家解释的约束。尽管只在极少数例外情况下进行了研究,但多功能或多模式共聚焦分析在提供更广泛的信息基础和稳定解释歧义方面具有巨大潜力。在这个项目中,我们开发了一个由共焦拉曼显微光谱(CRM)和空间分辨瞬变吸收技术(微分共焦吸收显微镜,dCAM)组成的组合装置,并结合一个有效和高效的可视化分析工具来获得多维数据集。多模式数据的复杂性要求在实验以及数据分析和可视化方面都采用新的科学方法。在第一个项目阶段,我们可以完成将dCAM模式技术集成到我们的CRM显微镜系统中。对新系统的评估显示,dCAM信号出人意料地强而稳定,3D空间分辨率接近理论最小值。在分析方面,我们完成了第一个能够对单峰CRM数据集进行在线可视化分析的系统。在第二个项目阶段,项目的实验部分将把时间分辨的dCAM测量整合到CRM中,以便在适当的光电材料和器件选择上同时探索电荷载流子、温度动力学和化学或晶体微结构。计划中的DCAM升级为傅立叶域DCAM(FddCAM)将使我们能够重建光激活衰变机制的全时间轨迹。同时,数据分析和可视化部分将进一步扩展,以便从多模式数据集中提取相关信息,并允许对不同效果之间的复杂关系进行交互式可视化分析。这就需要新的技术来进行分层数据管理、用户指南和不确定性可视化。除了在常见分析问题方面的密切合作外,我们还将进行几项用户研究,以评估拟议的可视化和分析性数据探索方法的可用性和有效性。

项目成果

期刊论文数量(9)
专著数量(0)
科研奖励数量(0)
会议论文数量(0)
专利数量(0)
Visual Analysis of Confocal Raman Spectroscopy Data using Cascaded Transfer Function Design
  • DOI:
    10.1111/cgf.13183
  • 发表时间:
    2017-06
  • 期刊:
  • 影响因子:
    2.5
  • 作者:
    C. Schikora;Markus Plack;R. Bornemann;P. Bolívar;A. Kolb
  • 通讯作者:
    C. Schikora;Markus Plack;R. Bornemann;P. Bolívar;A. Kolb
Efficient, robust, and scale-invariant decomposition of Raman spectra
拉曼光谱的高效、鲁棒且尺度不变的分解
Optimizing the optical and electrical properties of graphene ink thin films by laser-annealing
  • DOI:
    10.1088/2053-1583/2/1/011003
  • 发表时间:
    2015-03-01
  • 期刊:
  • 影响因子:
    5.5
  • 作者:
    Del, Sepideh Khandan;Bornemann, Rainer;Lemme, Max C.
  • 通讯作者:
    Lemme, Max C.
Generic visual analysis for multi- and hyperspectral image data
多光谱和高光谱图像数据的通用视觉分析
Radviz-based visual analysis of multispectral images
基于Radviz 的多光谱图像视觉分析
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Professor Dr.-Ing. Peter Haring Bolívar其他文献

Professor Dr.-Ing. Peter Haring Bolívar的其他文献

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{{ truncateString('Professor Dr.-Ing. Peter Haring Bolívar', 18)}}的其他基金

Towards Ubiquitous GRAphene based RF COmmunications - demonstrating and understanding graphene based plasmonic THz antenna potential and limitations
迈向无处不在的基于石墨烯的射频通信 - 演示和理解基于石墨烯的等离子体太赫兹天线的潜力和局限性
  • 批准号:
    279150938
  • 财政年份:
    2015
  • 资助金额:
    --
  • 项目类别:
    Research Grants
Dynamisches 3D-Sehen 3D Bilderfassung im Terahertzbereich basierend auf elektrooptischer Detektion (3D THz Bilderfassung)
动态3D视觉基于光电检测的太赫兹范围内的3D图像捕获(3D THz图像捕获)
  • 批准号:
    22913955
  • 财政年份:
    2006
  • 资助金额:
    --
  • 项目类别:
    Research Grants
Aperturlose Terahertz-(THz)-Nahfeldmikroskopie zur Steigerung der Ortsauflösung bildgebender Verfahren im THz-Frequenzbereich
无孔径太赫兹 (THz) 近场显微镜可提高太赫兹频率范围内成像过程的空间分辨率
  • 批准号:
    5447084
  • 财政年份:
    2005
  • 资助金额:
    --
  • 项目类别:
    Research Grants
Kohärente Intrabanddynamik elektronischer Wellenpakete in Photonic-Bandgap-Materialien
光子带隙材料中电子波包的相干带内动力学
  • 批准号:
    5236002
  • 财政年份:
    2000
  • 资助金额:
    --
  • 项目类别:
    Priority Programmes
Hetero-Integration of Perovskite Lasers into Silicon Photonics (HIPER-LASE)
钙钛矿激光器异质集成到硅光子学中 (HIPER-LASE)
  • 批准号:
    441341044
  • 财政年份:
  • 资助金额:
    --
  • 项目类别:
    Research Grants
Coherent L2S THz Imaging Systems
相干 L2S 太赫兹成像系统
  • 批准号:
    498558252
  • 财政年份:
  • 资助金额:
    --
  • 项目类别:
    Research Units

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