Sequence and Annotation of the Euchromatin of Tomato.

番茄常染色质的序列和注释。

基本信息

项目摘要

The genome of tomato (Solanum lycopersicon) contains approximately 950 million base pairs of DNA, more than 75% of which is densely packed and largely devoid of genes. The majority of genes are found in long contiguous stretches of gene-rich DNA located on the distal portions of each chromosome arm. In this project, we will lay the foundation for the sequencing of the gene-rich regions of all 12 tomato chromosomes by an international consortium as part of the Solanaceae Genomics Project or "SOL" (http://www.sgn.cornell.edu/solanaceae-project/). The project will generate sequences from a sheared tomato DNA library to gain more insight into the structure of the tomato genome, and sequence 400,000 Bacterial Artificial Chromosome (BAC) ends to generate a sequence connector database. In addition, 20 carefully chosen BACs from the 5 US chromosomes will be fully sequenced. Fluorescence in-situ hybridization (FISH) analysis will be performed with about 50 selected BACs to further define the gene-rich regions in tomato. The Solanaceae Genome Network (SGN, http://www.sgn.cornell.edu/), a relational database and website devoted to the genomics of solanaceous species, will be expanded to accommodate and incorporate all of the sequencing, annotation and mapping information generated from this project.
番茄(Solanum lycopersicon)的基因组含有大约9.5亿个碱基对的DNA,其中超过75%是密集包装的,基本上没有基因。 在这个项目中,我们将为一个国际财团对所有12条番茄染色体的基因丰富区域进行测序奠定基础,该财团是茄科基因组学项目或“SOL”(http://www.sgn.cornell.edu/solanaceae-project/)的一部分。该项目将从剪切的番茄DNA文库中生成序列,以更深入地了解番茄基因组的结构,并对40万个细菌人工染色体(BAC)末端进行测序,以生成序列连接器数据库。此外,从5条美国染色体中精心挑选的20个BAC将被完全测序。 荧光原位杂交(FISH)分析将进行约50个选定的BAC,以进一步确定基因丰富的区域在番茄。茄科基因组网络(SGN,http://www.sgn.cornell.edu/)是一个致力于茄科物种基因组学的关系数据库和网站,将得到扩展,以容纳和纳入该项目产生的所有测序、注释和绘图信息。

项目成果

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Steven Tanksley其他文献

Steven Tanksley的其他文献

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{{ truncateString('Steven Tanksley', 18)}}的其他基金

Investigations into the Developmental, Genetic and Molecular Events Underlying Changes in Floral Morphology Associated with Speciation and Sex in Plants
与植物物种形成和性别相关的花形态变化背后的发育、遗传和分子事件的调查
  • 批准号:
    0343078
  • 财政年份:
    2004
  • 资助金额:
    --
  • 项目类别:
    Continuing grant
Workshop: Genomic Sequence Resources for Tomato and the Solanaceae to be Held in Washington, DC, November, 2003
研讨会:番茄和茄科基因组序列资源研讨会将于 2003 年 11 月在华盛顿特区举行
  • 批准号:
    0341409
  • 财政年份:
    2003
  • 资助金额:
    --
  • 项目类别:
    Standard Grant
Exploitation of Tomato as a Model for Comparative and Functional Genomics
利用番茄作为比较和功能基因组学模型
  • 批准号:
    0116076
  • 财政年份:
    2001
  • 资助金额:
    --
  • 项目类别:
    Continuing Grant
Development of Tools for Tomato Functional Genomics: Application to Analysis of Fruit Development, Responses to Pathogens, and Genome Synteny with Arabidopsis
番茄功能基因组学工具的开发:应用于拟南芥果实发育、病原体反应和基因组同线性分析
  • 批准号:
    9872617
  • 财政年份:
    1998
  • 资助金额:
    --
  • 项目类别:
    Continuing grant
Comparative Organization of Homologous Genes in Five Genera of Higher Plants
高等植物五个属同源基因的比较组织
  • 批准号:
    8517773
  • 财政年份:
    1986
  • 资助金额:
    --
  • 项目类别:
    Standard Grant

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