Microbial Genome Sequencing: High-Resolution Phylogenomics of Halophilic Archaea

微生物基因组测序：嗜盐古菌的高分辨率系统基因组学

• 批准号: 0949453
• 负责人: Marc Facciotti
• 金额: $ 72.47万
• 依托单位: University of California-Davis
• 依托单位国家: 美国
• 项目类别: Standard Grant
• 财政年份: 2009
• 资助国家: 美国
• 起止时间: 2009-10-01 至 2012-09-30
• 项目状态: 已结题
• 来源: https://www.nsf.gov/awardsearch/showAward?AWD_ID=0949453&HistoricalAwards=false
• 关键词: Microbial; Genome; Sequencing; Resolution; Phylogenomics

Halophilic archaea share the common ability to live in hypersaline environments (typically in excess of 3M NaCl) but also possess a diverse set of metabolic activities, some of which have already found their way into biotechnological applications. Several members of the archaeal family Halobacteriaceae are being fully sequenced by Dr. Facciotti (UC Davis) and collaborators Dr. Eisen (UC Davis) and postdoc scholar Dr. Darling to advance our understanding of genome organization and evolution of microbial genomes and to provide a foundation for systems biology efforts to experimentally query novel aspects of microbial biochemistry, physiology, metabolism, development and cellular biology. The critical aspect to this study is that these genome sequences will provide sufficient coverage of this phylogenetic family (both in breadth and depth) so that comparative studies on the organization of genomes and the exchange and reshuffling of genetic information will become possible. Because the organisms proposed for sequencing have adapted for life in hypersaline environments, the development of these as model systems will also directly shape our understanding of salt tolerance, an issue that continues to be of great relevance in the development of salt and drought resistant food crops. The PIs also intend to address whether the biological species concept can be applied to archaea. The project will also investigate archaeal DNA replication, which shares aspects with both eukaryotic and prokaryotic genome replication, and genome organization. Since halophiles are excellent model systems for classroom use, the PIs intend to develop a new educational module with high school teachers and students to learn genome sequence analysis. The PIs will make this module freely available via www.halophiles.org.

嗜盐古菌具有在高盐环境（通常超过3M NaCl）中生活的共同能力，但也具有多种代谢活动，其中一些已经进入生物技术应用。Facciotti博士（加州大学戴维斯分校）和合作者Dr. Dallen博士（加州大学戴维斯分校）和博士后学者Dr. Darling正在对古菌家族Halobacteriaceae的几个成员进行全面测序，以促进我们对微生物基因组的基因组组织和进化的理解，并为系统生物学工作提供基础，以实验方式查询微生物生物化学，生理学，代谢，发育和细胞生物学的新方面。这项研究的关键方面是，这些基因组序列将提供足够的覆盖面，这一系统发育的家庭（在广度和深度），使比较研究的组织基因组和交换和重组的遗传信息将成为可能。由于提出测序的生物体已经适应了高盐环境中的生活，因此这些模型系统的开发也将直接塑造我们对耐盐性的理解，这一问题在耐盐和抗旱粮食作物的开发中仍然具有重要意义。PI还打算解决生物物种概念是否可以适用于古生菌。该项目还将研究古细菌DNA复制，它与真核和原核基因组复制和基因组组织有着共同的方面。由于嗜盐菌是课堂使用的优秀模型系统，PI打算开发一个新的教育模块，让高中教师和学生学习基因组序列分析。研究所将通过www.halophiles.org免费提供这一模块。