Collaborative Research: CDS&E: Systematic Multiscale Modeling using the Knowledgebase of Interatomic Models (KIM)

合作研究：CDS

• 批准号: 1408717
• 负责人: James Sethna
• 金额: $ 44.26万
• 依托单位: Cornell University
• 依托单位国家: 美国
• 项目类别: Continuing Grant
• 财政年份: 2014
• 资助国家: 美国
• 起止时间: 2014-10-01 至 2018-09-30
• 项目状态: 已结题
• 来源: https://www.nsf.gov/awardsearch/showAward?AWD_ID=1408717&HistoricalAwards=false
• 关键词: Collaborative; Research; CDS& Systematic; Multiscale

NONTECHNICAL SUMMARYThis award supports OPENKIM which supports the community of researchers using computer simulations of atoms based on Newton's Laws to attack materials science, chemistry, engineering, and physics problems enabling the discovery of new materials, the design of new devices, the understanding of biochemical processes and much more. Atomistic simulations play a key role in realistic scientific, engineering, and industrial applications. These simulations increasingly use fitted interatomic models (IMs), mathematical prescriptions that describe the forces acting on atoms when they interact, to predict the properties of materials, the way they respond to external stresses, and to design innovative nanostructures, tiny structures of atoms some 100,000 times smaller than a human hair. In the past the potential of atomistic simulations of this kind has been limited by several factors: (1) the lack of a standardized application programing interface has made it difficult to transfer IMs from one simulation program to another; (2) the lack of a curated electronic repository for storing and exchanging computer implementations of IMs has made it difficult to reproduce published results; (3) the lack of tools for comparing the accuracy of IMs made it difficult to use IMs with confidence in new applications. These limitations have been addressed by the creation of the Open Knowledgebase of Interatomic Models (OpenKIM), a collaborative online materials project to rationalize, standardize, and characterize IMs. This award supports OpenKIM as it goes forward in important ways that will facilitate scientific and engineering progress in fields from growing electronic circuits to airplane manufacture. It will make sharp evaluations and comparisons between rival IMs and simulation methods, allowing computational researchers to rapidly explore alternative published IMs or develop and validate new ones for their use. It will also facilitate replication of results in scientific simulations. This project will extend OpenKIM in order to draw the computational chemistry and molecular biology communities into this materials endeavor, facilitating communication between two communities with common goals and interests but hitherto divided by language, units, and computational conventions. Students and post-docs in the group have the opportunity of collaborating with an international, interdisciplinary group of well-known scientists and engineers on a cross-section of challenging scientific problems, such as the role of defects in determining properties of materials and the effect of unsatisfied chemical bonds in electronic device operation. By lowering the barriers to entry into computational materials science, OpenKIM is facilitating the entry of underrepresented groups and those from developing nations into this technologically and scientifically central field.TECHNICAL SUMMARYThis award supports OpenKIM, a collaborative online materials project to rationalize, standardize, and characterize interatomic models (IMs) used to represent energies and forces between atoms in materials simulations. This project is aimed to support, extend, and leverage OpenKIM to do science. The Principal Investigators will blend the wisdom and experience of the materials community with advanced methods from machine learning, data mining, and information geometry to radically simplify and make more rigorous the field of atomistic simulations of materials. OpenKIM represents an unusual opportunity to answer fundamental scientific questions. With full and open access, the PIs anticipate many researchers will use the rich OpenKIM Repository to address scientific and methodological questions of the field. The PIs will support these activities by incorporating new IMs, reference data, and tests, by extending the KIM standard to support long-range electrostatic fields, Monte Carlo, and biomolecular bonded force fields, and by continuing to provide documentation, talks, workshops, and tutorials on KIM. To further the KIM mission, the PIs will address two broad and fascinating issues of critical importance to successful sequential multiscale modeling: (1) What key features does an IM need to reproduce in order to accurately model phenomenon X at a continuum scale? The project will provide tools to answer this question, by (a) developing functional forms for anisotropic materials properties to encapsulate the behavior of known defects and interfaces which are properties already identified as vital for continuum simulation of microstructure evolution, and (b) using manifold-learning methods gleaned from information geometry theory, which applies the techniques of differential geometry to the field of probability theory, to find empirical heuristics or rules that provide insight into the higher scale behavior of a class of IMs, and insight on the real world. (2) How reliable will a given IM be for a given application X? The PIs will address this component of uncertainty quantification, also called IM transferability, by (a) using machine-learning techniques to identify key interatomic configurations which strongly correlate with important continuum scale materials properties and using statistical methods to estimate IM uncertainties for these configurations, and (b) using the large uncertainties in IM fitted parameters to provide Bayesian information geometry estimates for the systematic errors in IM predictions.

非技术摘要该奖项支持 OPENKIM，OPENKIM 支持研究人员社区使用基于牛顿定律的原子计算机模拟来解决材料科学、化学、工程和物理问题，从而实现新材料的发现、新设备的设计、对生化过程的理解等等。 原子模拟在现实的科学、工程和工业应用中发挥着关键作用。这些模拟越来越多地使用拟合的原子间模型 (IM)，即描述原子相互作用时作用在原子上的力的数学公式，以预测材料的特性、它们对外部应力的响应方式，并设计创新的纳米结构，即比人类头发小约 100,000 倍的原子微小结构。过去，这种原子模拟的潜力受到以下几个因素的限制：（1）缺乏标准化的应用程序编程接口使得将 IM 从一个模拟程序转移到另一个模拟程序变得困难； (2) 缺乏用于存储和交换 IM 计算机实现的精选电子存储库，导致难以复制已发表的结果； (3) 缺乏比较 IM 准确性的工具，导致难以在新应用中充满信心地使用 IM。这些限制已通过创建原子间模型开放知识库 (OpenKIM) 得到解决，这是一个协作在线材料项目，旨在合理化、标准化和表征 IM。该奖项支持 OpenKIM，因为它在重要方面取得了进展，将促进从电子电路发展到飞机制造等领域的科学和工程进步。它将在竞争对手的 IM 和模拟方法之间进行尖锐的评估和比较，使计算研究人员能够快速探索替代的已发布的 IM 或开发和验证新的 IM 供其使用。它还将促进科学模拟结果的复制。该项目将扩展 OpenKIM，以吸引计算化学和分子生物学社区参与到这一材料工作中，促进具有共同目标和兴趣但迄今为止因语言、单位和计算约定而划分的两个社区之间的沟通。该小组的学生和博士后有机会与由知名科学家和工程师组成的国际跨学科小组合作，研究具有挑战性的科学问题的横截面，例如缺陷在确定材料性能中的作用以及不满足化学键在电子设备操作中的影响。通过降低进入计算材料科学的门槛，OpenKIM 正在促进代表性不足的群体和来自发展中国家的群体进入这一技术和科学核心领域。技术摘要该奖项支持 OpenKIM，这是一个在线协作材料项目，旨在合理化、标准化和表征原子间模型 (IM)，用于表示材料模拟中原子之间的能量和力。该项目旨在支持、扩展和利用 OpenKIM 开展科学研究。首席研究员将把材料界的智慧和经验与机器学习、数据挖掘和信息几何等先进方法相结合，从根本上简化材料原子模拟领域并使其更加严格。 OpenKIM 代表了回答基本科学问题的一个不寻常的机会。通过完全开放的访问，PI 预计许多研究人员将使用丰富的 OpenKIM 存储库来解决该领域的科学和方法论问题。 PI 将通过整合新的 IM、参考数据和测试、扩展 KIM 标准以支持远程静电场、蒙特卡罗和生物分子键合力场，以及继续提供有关 KIM 的文档、讲座、研讨会和教程来支持这些活动。为了进一步推进 KIM 的使命，PI 将解决两个广泛且令人着迷的问题，这对于成功的顺序多尺度建模至关重要：（1）IM 需要重现哪些关键特征才能在连续尺度上准确地模拟现象 X？该项目将提供回答这个问题的工具，方法是：（a）开发各向异性材料特性的函数形式，以封装已知缺陷和界面的行为，这些特性已经被认为对于微观结构演化的连续介质模拟至关重要；（b）使用从信息几何理论中收集到的流形学习方法，将微分几何技术应用于概率论领域，以找到经验启发法 或提供对一类 IM 的更大规模行为的洞察以及对现实世界的洞察的规则。 (2) 给定 IM 对于给定应用程序 X 的可靠性如何？ PI将解决不确定性量化的这个组成部分，也称为IM可转移性，通过（a）使用机器学习技术来识别与重要的连续尺度材料特性密切相关的关键原子间配置，并使用统计方法来估计这些配置的IM不确定性，以及（b）使用IM拟合参数中的大不确定性为IM预测中的系统误差提供贝叶斯信息几何估计。