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CAREER: Probing Multiscale Growth Dynamics in Filamentous Cell Walls

职业：探索丝状细胞壁的多尺度生长动力学

基本信息

批准号：
2144372
负责人：
Min Wu
金额：
$ 45万
依托单位：
Worcester Polytechnic Institute
依托单位国家：
美国
项目类别：
Continuing Grant
财政年份：
2022
资助国家：
美国
起止时间：
2022-04-01 至 2027-03-31
项目状态：
未结题

来源：
https://www.nsf.gov/awardsearch/showAward?AWD_ID=2144372&HistoricalAwards=false
关键词：
CAREER Probing Multiscale Growth Dynamics

项目摘要

Various plants and fungi rely on filamentous growth to develop, reproduce, or survive under environmental stress. For example, the growth of root hairs with one-cell width effectively increases the surface area of the plant roots to absorb water and nutrients. Although experimental approaches have been able to track cell wall morphology and kinematics on the expanding cell wall surface for more than a century, the regulation of cell wall growth needs further elucidation. This project will develop mathematical models and computational methods to simulate the cell wall expansion due to the spatial patterning of new cell wall materials and mechanical interaction with the cell interior. Further, inference methods will be devised to predict the spatial patterning of wall-material trafficking from the cell wall geometry and quantify how volume growth inside the cell wall is distributed and rearranged to sustain the cell wall geometry during expansion and under mechanical constraints. The methods developed in this research can be applied to filamentous growth systems such as pollen tubes, root hairs, fungus hyphae, thus having significant implications in advancing agriculture and improving public health. Complementary to the research, the investigator will engage students, including K-12, undergraduate, and graduate students, in research mentorship, journal clubs, and a new interactive learning platform "Filaform”, to promote interest and transdisciplinary understanding of this biological process by leveraging geometry and other mathematics in conjunction with modern and emerging experimental techniques. To reach the research and education goals, two complementary mathematical models at different scales will be developed. The first will be a thin-shell model approximating the cell wall surface as a growing elastic boundary inflated by turgor pressure from the cell interior. Cubic-spline solutions will be developed to simulate the evolution of surface growth under the influence of turgor pressure and the distribution of exocytosis, a process that distributes new cell wall material along the cell wall interior surface. In addition, an inverse problem coupled with a subset of the model equations will be formulated to infer the distribution of exocytosis given the steady-state cell shape. Taking the exocytosis distribution as an input, the second model will be a three-dimensional model that describes the growth distribution and directionality (anisotropy) across the cell wall thickness. An energy-based material-point method will be developed to simulate the dynamics of the moving cell-wall domain. The investigator will infer the spatial map of the volume growth and anisotropy in the cell-wall domain by formulating optimization problems constrained by the three-dimensional model. Theoretical predictions from both models will be validated by experiments tracking the cell wall morphology, signals of protein complexes involved in exocytosis, and new polymers in the cell wall. The investigator will create an open-source interactive teaching and learning platform for outreach to K-12 educators and students based on the thin-shell model and its simulation. This project is jointly funded by the Mathematical Biology program of the Division of Mathematical Science and by the Biomechanics and Mechanobiology (BMMB) program in the Division of Civil, Mechanical, and Manufacturing Innovation.This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

各种植物和真菌依靠丝状生长来发育、繁殖或在环境胁迫下生存。例如，具有单细胞宽度的根毛的生长有效地增加了植物根的表面积以吸收水分和养分。虽然实验方法已经能够跟踪细胞壁的形态学和运动学的扩展细胞壁表面超过世纪，细胞壁生长的调节需要进一步阐明。该项目将开发数学模型和计算方法，以模拟由于新细胞壁材料的空间图案和与细胞内部的机械相互作用而导致的细胞壁膨胀。此外，推理方法将被设计来预测从细胞壁几何形状的壁材料运输的空间图案，并量化细胞壁内的体积生长如何分布和重新排列，以维持细胞壁几何形状在膨胀期间和机械约束下。本研究中开发的方法可应用于丝状生长系统，如花粉管，根毛，真菌菌丝，从而对促进农业和改善公共卫生具有重要意义。作为研究的补充，研究人员将让学生，包括K-12，本科生和研究生，参与研究导师，期刊俱乐部和新的互动学习平台“Filaform”，通过利用几何和其他数学结合现代和新兴的实验技术来促进对这一生物过程的兴趣和跨学科理解。为了达到研究和教育目标，将开发两个不同尺度的互补数学模型。第一个将是一个薄壳模型近似细胞壁表面作为一个不断增长的弹性边界膨胀的膨压从细胞内部。将开发三次样条解来模拟在膨压和胞吐作用分布的影响下表面生长的演变，胞吐作用是一种将新的细胞壁材料沿着细胞壁内表面分布的过程。此外，一个反问题加上一个子集的模型方程将制定推断的分布胞吐给定的稳态细胞形状。以胞吐分布作为输入，第二个模型将是一个三维模型，描述了生长分布和方向性（各向异性）的细胞壁厚度。将开发一种基于能量的物质点方法来模拟移动细胞壁域的动力学。研究者将通过制定由三维模型约束的优化问题来推断细胞壁域中的体积增长和各向异性的空间图。这两个模型的理论预测将通过跟踪细胞壁形态、参与胞吐作用的蛋白质复合物信号和细胞壁中的新聚合物的实验来验证。研究人员将创建一个开源的互动式教学和学习平台，以薄壳模型及其模拟为基础，向K-12教育工作者和学生推广。该项目由数学科学部的数学生物学项目和土木、机械和制造创新部的生物力学和机械生物学（BMMB）项目共同资助。该奖项反映了NSF的法定使命，并通过使用基金会的智力价值和更广泛的影响审查标准进行评估，被认为值得支持。