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CCF:SHF:Small:NAND gate based integrated DNA circuits

CCF:SHF:Small：基于与非门的集成 DNA 电路

基本信息

批准号：
2226021
负责人：
Dmitry Kolpashchikov
金额：
$ 36.3万
依托单位：
The University of Central Florida Board of Trustees
依托单位国家：
美国
项目类别：
Standard Grant
财政年份：
2022
资助国家：
美国
起止时间：
2022-10-01 至 2025-09-30
项目状态：
未结题

来源：
https://www.nsf.gov/awardsearch/showAward?AWD_ID=2226021&HistoricalAwards=false
关键词：
CCF SHF Small NAND gate

项目摘要

This project is devoted to addressing existing technological challenges toward building a computer made of DNA. Electronic computers have dramatically improved information processing speed and ultimately promoted progress in science, education, technologies, and welfare. However, modern electronic computers are difficult to use inside human bodies as they are made of non-biocompatible and non-biodegradable materials. Moreover, electronic computers can not directly recognize chemical inputs (e.g., proteins, hormones, DNA, and RNA) and require chemical sensors with capabilities to translate the chemical recognition event into an electronic signal. On the other hand, computers do not have to be electronic. For example, some early computers used mechanical movements of their components as input/output signals. Biomedical applications would benefit if computers were made of biological molecules. Such computers could be used as components of molecular biorobots to continuously control the health state of a human body without human assistance. In addition, they could be used in personalized medicine to analyze complex mixtures of biological markers, thus improving health care in the nation. The principles of the DNA nano-processor developed in this project can impact the biomedical field by providing efficient tools for monitoring and correcting a disease state. The concepts and experimental approaches used in this project will be incorporated into undergraduate and graduate education.The Project Investigator's long-term goal is to construct a molecular scale processor from DNA logic gates. This project includes the following stages needed for building a DNA nano-processor. First, principles for integrating DNA logic gates in DNA circuits will be developed. Second, principles of connecting two integrated circuits in a more complex circuit will be established to enable modular and scalable construction of complex DNA circuits. Third, a universal mechanism for powering the integrated DNA circuits via signal amplification will be developed. Finally, the developed technologies will be applied to assemble complex computational circuits made of DNA molecules. Therefore, this project will solve the problems of DNA logic gate integration and powering. The solution to these problems will create a basis for manufacturing a DNA computer, a smaller and biocompatible counterpart of the modern silicon processors. The research activities will be integrated with education via (i) developing biochemistry wet lab experiments dealing with the integration of DNA logic gates and their application in molecular diagnostics; (ii) research training of students at undergraduate and graduate levels; (iii) outreach program. The outreach activity has the potential to impact high school students across multi-ethnic Central Florida through partnerships with local high schools.This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

该项目致力于解决现有的技术挑战，以建立一个由DNA制成的计算机。电子计算机极大地提高了信息处理速度，并最终促进了科学、教育、技术和福利的进步。然而，现代电子计算机很难在人体内使用，因为它们是由非生物相容性和非生物降解材料制成的。此外，电子计算机不能直接识别化学输入（例如，蛋白质、激素、DNA和RNA），并且需要具有将化学识别事件翻译成电子信号的能力的化学传感器。另一方面，计算机不必是电子的。例如，一些早期的计算机使用其组件的机械运动作为输入/输出信号。如果计算机是由生物分子制成的，生物医学应用将受益匪浅。这种计算机可以作为分子生物机器人的组件，在没有人类帮助的情况下连续控制人体的健康状态。此外，它们还可以用于个性化医疗，分析生物标记物的复杂混合物，从而改善国家的医疗保健。该项目开发的DNA纳米处理器的原理可以通过提供有效的工具来监测和纠正疾病状态，从而影响生物医学领域。本计画中所使用的概念和实验方法将被纳入本科和研究生教育。计画研究者的长期目标是从DNA逻辑闸建构一个分子尺度的处理器。该项目包括构建DNA纳米处理器所需的以下阶段。首先，将开发在DNA电路中集成DNA逻辑门的原理。其次，将建立在更复杂的电路中连接两个集成电路的原理，以实现复杂DNA电路的模块化和可扩展的构建。第三，将开发一种通过信号放大为集成DNA电路供电的通用机制。最后，开发的技术将用于组装由DNA分子组成的复杂计算电路。因此，本计画将解决DNA逻辑闸的整合与供电问题。这些问题的解决方案将为制造DNA计算机奠定基础，DNA计算机是现代硅处理器的更小和生物相容的对应物。研究活动将通过以下方式与教育相结合：（i）开发生物化学湿实验室实验，处理DNA逻辑门的整合及其在分子诊断中的应用;（ii）对本科生和研究生进行研究培训;（iii）推广计划。通过与当地高中的合作，外展活动有可能影响多民族的佛罗里达中部的高中生。该奖项反映了NSF的法定使命，并被认为值得通过使用基金会的智力价值和更广泛的影响审查标准进行评估来支持。