Development of Optimal Control derived experiments for biological MAS solid-state NMR
Development of Optimal Control derived experiments for biological MAS solid-state NMR
批准号:
431813315
负责人:
Professor Dr. Bernd Reif
金额:
$0.0万
依托单位:
依托单位国家:
德国
项目类别:
Research Grants
财政年份:
--
资助国家:
德国
项目状态:
未结题
起止时间:
中文摘要
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英文摘要
This proposal is a follow-up application of a joint DFG-GAČR project carried out in the time period 2020-2022. The project focuses on MAS (Magic Angle Spinning) solid-state NMR experiments applied to biological solids like amyloid fibrils and membrane proteins that are still hampered by low sensitivity. Using optimal control methods, we developed phase-preserving coherence transfer experiments. This strategy improves the sensitivity of the experiment by a factor of >1.41 for each indirectly sampled spectral dimension in multidimensional correlation experiments and enables large enhancements in multidimensional solid-state NMR experiments. At the same time, pulse shapes are robust against rf miscalibration and facilitate a user-friendly experimental implementation. In the new project, we will introduce adaptive approximation methods for spin dynamics calculations to accelerate optimal control optimizations. In addition to purely numerical simulations, we will employ effective Hamiltonian theory and make use of repetitive pulse sequence elements to compensate for large RF field inhomogeneities. We will consider specific hardware issues such as rf inhomogeneity imbalances on different channels as well as MAS instabilities to improve existing pulse sequences further. We will apply phase-preserving methodologies to yield pulse schemes that involve CB chemical shifts for side chain assignments. We will implement efficient methods for assigning methyl resonances, and we will introduce techniques for the quantitative measurement of distances for structure determination at very fast MAS. The potential impact of the project is enormous, as it will greatly facilitate the implementation and analysis of higher dimensional experiments required for the routine characterization of biomolecular structures by MAS solid-state NMR.
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Conformational dynamics and misfolding of the fibril precursor proteins studied by NMR
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批准号:422489899
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项目类别:Research Units
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资助金额:$0.0万
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财政年份:2019
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负责人:Professor Dr. Bernd Reif
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依托单位:
Structural Characterization of hIAPP aggregates using MAS solid-state NMR
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批准号:400866545
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项目类别:Research Grants
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资助金额:$0.0万
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财政年份:2018
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负责人:Professor Dr. Bernd Reif
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依托单位:
Structural analysis of SAA-amyloid fibrils by cryo-EM and NMR
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批准号:313913757
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项目类别:Research Grants
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资助金额:$0.0万
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财政年份:2016
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负责人:Professor Dr. Bernd Reif
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依托单位:
NMR spectroscopic characterization of ribosomal complexes
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批准号:289622162
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项目类别:Research Grants
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资助金额:$0.0万
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财政年份:2016
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负责人:Professor Dr. Bernd Reif
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依托单位:
Structural characterization of the interaction between the Alzheimer's disease beta-amyloid peptide and the catechin EGCG
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批准号:264855120
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项目类别:Research Grants
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资助金额:$0.0万
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财政年份:2014
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负责人:Professor Dr. Bernd Reif
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依托单位:
DNP enhanced MAS solid-state NMR of biological systems in their native context
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批准号:226561002
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项目类别:Research Grants
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资助金额:$0.0万
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财政年份:2012
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负责人:Professor Dr. Bernd Reif
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依托单位:
Characterization of dynamic processes in proteins by combining solid- and solutionstate NMR spectroscopy
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批准号:49988221
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项目类别:Research Grants
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资助金额:$0.0万
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财政年份:2007
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负责人:Professor Dr. Bernd Reif
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依托单位:
Strukturelle und kinetische Charakterisierung von Intermediaten der Fehlfaltung und Aggregation von Proteinen
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批准号:5456861
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项目类别:Research Units
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资助金额:$0.0万
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财政年份:2005
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负责人:Professor Dr. Bernd Reif
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依托单位:
Strukturelle Charakterisierung des Multidrug-Transporters EmrE mittels MAS Festkörper-NMR-Spektroskopie
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批准号:5424517
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项目类别:Research Grants
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资助金额:$0.0万
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财政年份:2004
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负责人:Professor Dr. Bernd Reif
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依托单位:
Entwicklung NMR spektroskopischer Methoden zwischen Flüssigkeit und Festkörper. Strukturuntersuchungen an orientierten Biomakromolekülen
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批准号:5229434
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项目类别:Independent Junior Research Groups
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资助金额:$0.0万
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财政年份:2000
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负责人:Professor Dr. Bernd Reif
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依托单位:
Molecular insights into the misfolding pathways of antibody light chain proteins
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批准号:517295284
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项目类别:Research Grants
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资助金额:$0.0万
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财政年份:--
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负责人:Professor Dr. Bernd Reif
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依托单位:
Molecular Mechanism of BRICHOS interacting with amyloids
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批准号:491144489
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项目类别:Research Grants
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资助金额:$0.0万
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财政年份:--
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负责人:Professor Dr. Bernd Reif
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依托单位:
海外基金