Investigation of thermodynamic properties of lattice and off-lattice models for proteins and polymers
Investigation of thermodynamic properties of lattice and off-lattice models for proteins and polymers
批准号:
5446650
负责人:
Professor Dr. Wolfhard Janke
金额:
$0.0万
依托单位国家:
德国
项目类别:
Research Grants
财政年份:
2004
资助国家:
德国
项目状态:
已结题
起止时间:
2003-12-31 至 2017-12-31
中文摘要
有限长分子链的热力学行为的理解是非常重要的,因为对于杂聚物的构象状态的序列依赖类的识别是相当困难的。我们最近开发的多正则链生长方法能够在几乎所有温度下对晶格杂聚物进行采样。通过将其应用于蛋白质的简单晶格模型,序列和构象之间的关系将被分析,以及能量和结构量的波动是单体构象重排的指标。这将被转移到非格模型,其中应用了多规范采样和适当适应的链增长算法。对于这些模型,我们集中我们的注意力在低温下的玻璃样行为的研究。为了对其进行充分的描述,必须引入和研究合适的系统或“序”参数,如结构重叠参数。此外,我们的方法的应用程序有限长度的晶格均聚物与(伪)一阶的d größer als 3维的过渡是有趣的,因为该算法规避构象障碍与不太有利的状态。
英文摘要
The understanding of the thermodynamic behaviour of molecular chains with finite length is of extraordinary importance, since for heteropolymers the identification of the sequence-dependent classes of conformational states is quite difficult. Our recently developed multicanonical chain-growth method is capable to sample lattice heteropolymers at almost all temperatures. By applying it to simple lattice models for proteins, the relationship between sequence and conformation shall be analysed as well as fluctuations of energetic and structural quantities being indicators of conformational rearrangements of the monomers. This is to be carried over to off-lattice models, for which multicanonical sampling and a suitably adapted chaingrowth algorithm are applied. For these models we focus our attention to the study of the glass-like behaviour at low temperatures. For its adequate description, suitable system or "order" parameters, such as the structural overlap parameter, have to be introduced and studied. Furthermore, the application of our method to finite-length lattice homopolymers with (pseudo-)first-order-like transitions in d größer als 3 dimensions is intriguing, since the algorithm circumvents conformational barriers associated with less-favoured states.
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DOI:
10.1063/1.3223720
发表时间:
2009-09
期刊:
The Journal of chemical physics
影响因子:
--
作者:
[Stefan Schnabel;M. Bachmann;W. Janke]
通讯作者:
Stefan Schnabel;M. Bachmann;W. Janke
Evidence of aging and dynamic scaling in the collapse of a polymer.
聚合物塌陷中老化和动态缩放的证据
DOI:
10.1103/physreve.93.032506
发表时间:
2016
期刊:
Physical review. E
影响因子:
--
作者:
[S. Majumder, W. Janke]
通讯作者:
W. Janke
Molecular Dynamics and Monte Carlo simulations in the microcanonical ensemble: Quantitative comparison and reweighting techniques.
微正则系综中的分子动力学和蒙特卡罗模拟:定量比较和重新加权技术
DOI:
10.1063/1.4931484
发表时间:
2015
期刊:
The Journal of chemical physics
影响因子:
--
作者:
[P. Schierz, J. Zierenberg, W. Janke]
通讯作者:
W. Janke
Thermodynamics of tubelike flexible polymers.
管状柔性聚合物的热力学
DOI:
10.1103/physreve.80.011802
发表时间:
2009
期刊:
Physical review. E, Statistical, nonlinear, and soft matter physics
影响因子:
--
作者:
[T. Vogel, T. Neuhaus, M. Bachmann, W. Janke]
通讯作者:
W. Janke
Stable knotted phases in semiflexible polymers
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批准号:317744069
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项目类别:Research Grants
-
资助金额:$0.0万
-
财政年份:2016
-
负责人:Professor Dr. Wolfhard Janke
-
依托单位:
Free-energy landscapes of semiflexible theta-polymer aggregation with and without external force
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批准号:277838335
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项目类别:Research Grants
-
资助金额:$0.0万
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财政年份:2015
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负责人:Professor Dr. Wolfhard Janke
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依托单位:
Polymer Conformations and Diffusive Transport in Disordered Environments
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批准号:184114354
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项目类别:Research Units
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资助金额:$0.0万
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财政年份:2011
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负责人:Professor Dr. Wolfhard Janke
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依托单位:
Mass Transport Models on Networks
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批准号:155268393
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项目类别:Research Grants
-
资助金额:$0.0万
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财政年份:2009
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负责人:Professor Dr. Wolfhard Janke
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依托单位:
Simulationen der Statik und Dynamik von Spingläsern
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批准号:5430028
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项目类别:Research Grants
-
资助金额:$0.0万
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财政年份:2004
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负责人:Professor Dr. Wolfhard Janke
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依托单位:
Phasenübergänge in Systemen mit einschränkender Geometrie
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批准号:5432849
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项目类别:Research Grants
-
资助金额:$0.0万
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财政年份:2004
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负责人:Professor Dr. Wolfhard Janke
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依托单位:
Hochtemperaturreihen für Random-Bond-Modelle und Spingläser
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批准号:5262038
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项目类别:Research Grants
-
资助金额:$0.0万
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财政年份:2000
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负责人:Professor Dr. Wolfhard Janke
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依托单位:
Nonequilibrium Dynamics of Macromolecules
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批准号:469830597
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项目类别:Research Grants
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资助金额:$0.0万
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财政年份:--
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负责人:Professor Dr. Wolfhard Janke
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依托单位:
海外基金