Genetic pathways for impulsivity and drug reinforcement: DNA and transcriptome variation in mice

冲动和药物强化的遗传途径：小鼠 DNA 和转录组变异

• 批准号: 10176439
• 负责人: ELEAZAR ESKIN
• 金额: $ 54.81万
• 依托单位: UNIVERSITY OF CALIFORNIA LOS ANGELES
• 依托单位国家: 美国
• 财政年份: 2017
• 资助国家: 美国
• 起止时间: 2017-09-15 至 2023-05-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/10176439
• 关键词: Animals; Antisense RNA; Area; Behavior; Behavioral; Bioinformatics; Biological; Biological Assay; Biological Models; Brain; Brain region; Cell physiology; Clinical; Cocaine; Cocaine Abuse; Cocaine Dependence; Code; Complex; DNA; Data Set; Detection; Disease; Dissection; Drug Controls; Drug Regulations; Drug abuse; Equation; Foundations; Gene Expression; Genes; Genetic; Genetic study; Genotype; Goals; Heritability; Hybrids; Impulsivity; Inbred Strains Mice; Inbreeding; Incentives; International; Intravenous; Laboratories; Learning; Link; Maps; Medial; Meiosis; Messenger RNA; Modeling; Molecular Structure; Motivation; Mus; Nucleotides; Nucleus Accumbens; Pathway Analysis; Pathway interactions; Pharmaceutical Preparations; Phenotype; Play; Prefrontal Cortex; Production; Quantitative Evaluations; Quantitative Trait Loci; RNA; RNA Editing; RNA Splicing; Recombinant Inbred Strain; Recombinants; Recording of previous events; Regulatory Pathway; Resolution; Resources; Rewards; Risk; Role; Single Nucleotide Polymorphism; Site; Statistical Data Interpretation; Structure; Substance abuse problem; Technology; Therapeutic; Therapeutic Intervention; Tissues; Transcript; Untranslated RNA; Variant; Work; addiction; base; behavioral phenotyping; brain tissue; clinical phenotype; cocaine exposure; cocaine self-administration; disease phenotype; drug reinforcement; experience; gene product; genetic variant; genome-wide; genomic data; insight; novel; phenotypic data; public health relevance; tool; trait; transcriptome; transcriptome sequencing

PROJECT DESCRIPTION This project will chart with high-resolution the genetic pathways that give rise to defined clinical phenotypes related to cocaine addiction. We will utilize the power of the hybrid mouse diversity panel (HMDP), combined with high quality behavioral phenotyping and massive-scale RNA sequencing, to trace the interconnections from DNA to RNA to clinical trait and provide layered information on the mechanisms of cocaine abuse. The HMDP consists of 100 inbred and recombinant inbred strains and has a wide array of meiotic breakpoints. The panel has been densely genotyped with more than 200,000 single nucleotide polymorphisms (SNPs), allowing very fine mapping of quantitative trait loci (QTLs). Further, the HMDP is genetically stable and renewable and can be assayed for multiple phenotypes, yielding cumulative biological information. We will expand our previous HMDP-based studies of cocaine abuse-related traits by adding massive-scale RNA sequencing (RNA-Seq), in order to detail the genetic control of the pathways to addiction. Our approach offers the distinct advantage of mapping loci for known pathways as well as those involving variant and exotic RNA species. The following aims are proposed: (1) We will quantitate intravenous self-administration of cocaine in HMDP mice. This phenotype is regarded as being one of the most faithful models of cocaine abuse in animals and will allow evaluation of QTLs that regulate addiction-related phenotypes. (2) We will perform RNA-Seq on two key areas of the brain that play a role in the control of drug abuse, the medial prefrontal cortex (mPFC) and nucleus accumbens (NAc) shell region. (3) We will analyze the combined datasets with powerful statistical tools to understand the genetic regulation of drug abuse-related phenotypes. These studies will map genetic networks and inter-tissue regulatory pathways for cocaine addiction and suggest new, highly specific therapeutic strategies.

项目描述 该项目将以高分辨率绘制产生明确临床表型的遗传途径 与可卡因成瘾有关。我们将利用混合小鼠多样性面板 (HMDP) 的力量，结合 通过高质量的行为表型分析和大规模 RNA 测序来追踪相互联系 从 DNA 到 RNA 再到临床特征，并提供有关可卡因滥用机制的分层信息。这 HMDP 由 100 个自交系和重组自交系组成，并具有广泛的减数分裂断点。这 该小组已对超过 200,000 个单核苷酸多态性 (SNP) 进行了密集基因分型，允许 数量性状基因座 (QTL) 的精细定位。此外，HMDP 具有遗传稳定性和可再生性， 可以检测多种表型，产生累积的生物学信息。我们将扩大我们的 之前基于 HMDP 的可卡因滥用相关特征研究，通过添加大规模 RNA 测序 （RNA-Seq），以详细说明成瘾途径的遗传控制。我们的方法提供了独特的 绘制已知途径以及涉及变异和外来 RNA 物种的基因座的优势。这 提出以下目标：（1）我们将定量 HMDP 小鼠静脉内自我施用的可卡因。 这种表型被认为是动物中可卡因滥用最忠实的模型之一，并将允许 评估调节成瘾相关表型的 QTL。 (2)我们将在两个关键领域进行RNA-Seq 在控制药物滥用方面发挥作用的大脑的内侧前额叶皮层 (mPFC) 和神经核 伏隔核 (NAc) 壳区。 (3) 我们将使用强大的统计工具分析组合数据集 了解药物滥用相关表型的基因调控。这些研究将绘制遗传网络图 和可卡因成瘾的组织间调节途径，并提出新的、高度特异性的治疗方法 策略。