MULTIDOMAIN METALLOPROTEINS

多域金属蛋白

• 批准号: 2518972
• 负责人: Jeremy M. Berg
• 金额: $ 16.87万
• 依托单位: JOHNS HOPKINS UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 1991
• 资助国家: 美国
• 起止时间: 1991-09-30 至 1998-08-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/2518972
• 关键词: DNA binding protein; X ray crystallography; calorimetry; chemical binding; chemical kinetics; crystallization; metalloproteins; molecular site; nucleic acid sequence; oligonucleotides; protein engineering; protein sequence; protein structure function; zinc

Zinc finger proteins of the Cys2His2 type consists of tandem arrays of 28- 30 amino acid domains, each of which binds a zinc ion. It appears that almost all of these proteins bind double stranded DNA in a sequence specific fashion. This is a very large and important protein family. It is estimated that the human genome may encode up to 1000 proteins of this family, many of which appear to play a role in development. Moreover, changes in genes encoding proteins of this family have been associated with several different types of cancer. From crystallographic and other studies, it appears that each domain contacts three base pairs of DNA and these triplet subsites are directly abutted. This modular construction suggests that these proteins could be used for the design of sequence specific DNA binding domains once the relationships between the amino acid sequence of the protein domain and the nucleotide sequence of its subsite have been established. Some of these relationships have been developed through previous studies, particular for G/C rich binding sites. Through mutational and binding studies, these relationships will be extended to include as many binding sites as possible. Furthermore, the degree of discrimination available from particular protein-nucleotide contacts will be determined. This discrimination varies considerably from site to site and can be correlated with the nature of the structural interaction. These recognition rules used in two ways. First, these allow the prediction to binding sites from protein sequence. These predictions will be tested as binding sites are determined from additional proteins. Second, these rules can be used to design novel sequence specific DNA binding proteins. These designed proteins, which will be based on a fixed structural framework with variation of the four key residues associated with DNA interactions, will be characterized in terms of DNA binding specificity, overall affinity, and structure. A variety of applications can be conceived for these designed sequence specific binding proteins.

Cys2His2型锌指蛋白由28 - 30个氨基酸的串联阵列组成。 30个氨基酸结构域，每个结构域结合锌离子。似乎 几乎所有这些蛋白质都以一个序列结合双链DNA 具体的时尚。这是一个非常重要的蛋白质家族。是 据估计，人类基因组可能编码多达1000种蛋白质， 家庭，其中许多似乎在发展中发挥作用。此外，委员会认为， 编码该家族蛋白质的基因的变化与 几种不同类型的癌症。从晶体学和其他 研究表明，每个结构域与DNA的三个碱基对接触， 这些三重态亚位点直接是双价的。这种模块化结构 表明这些蛋白质可以用于序列设计 特异性DNA结合结构域一旦氨基酸之间的关系 蛋白质结构域的序列及其亚位点的核苷酸序列 已经建立。其中一些关系已经发展起来， 通过以前的研究，特别是G/C丰富的结合位点。通过 突变和结合研究，这些关系将被扩展到 包括尽可能多结合位点。此外， 从特定蛋白质-核苷酸接触中获得的辨别力将 被确定。这种歧视在不同的地点有很大的不同 并且可以与结构相互作用的性质相关。这些 识别规则有两种使用方式。首先，这些预测允许 蛋白质序列的结合位点。这些预测将被测试， 结合位点由另外的蛋白质确定。第二，这些规则 可用于设计新的序列特异性DNA结合蛋白。这些 设计的蛋白质，这将是基于一个固定的结构框架， 随着与DNA相互作用相关的四个关键残基的变化， 将以DNA结合特异性为特征，总体而言， 亲和力和结构。可以设想各种应用， 这些设计的序列特异性结合蛋白。