Molecular Balances: Computation meets Experiment

分子平衡：计算与实验的结合

• 批准号: 2857406
• 金额: --
• 依托单位: University of Manchester
• 依托单位国家: 英国
• 项目类别: Studentship
• 财政年份: 2022
• 资助国家: 英国
• 起止时间: 2022 至 无数据
• 项目状态: 未结题
• 来源: https://gtr.ukri.org/projects?ref=studentship-2857406
• 关键词: Molecular; Balances; Computation; meets; Experiment

- the research questions the project is trying to address/the objectives of the project; Molecular balances are relatively small systems designed to experimentally isolate a given type of interaction, and to what extent it is responsible for the behaviour of the total system. While the experimental literature on molecular balances steadily grows, its theoretical and computational counterpart is woefully underdeveloped. The overall objective is to fundamentally change this unacceptable situation. More specific objectives are:- apply the energy partitioning method Interacting Quantum Atoms (IQA) on well-studied named balances (e.g. Cockroft, Gung, Shimizu) using DFT with external dispersion correction (D3, D4).- enable the incorporation of non-DFT post-Hartree-Fock wavefunctions in the IQA-compatible evaluation of dispersion energy by linking the two-particle-density-matrix (2PDM) electron correlation energies to one-particle-density-matrix (1PDM) ones.- apply the in-house method Relative Energy Gradient (REG) to rank energy contributions by their importance in explaining the system's overall behaviour.- apply the in-house force field FFLUX on a selection of molecular balances in aqueous solution and monitor partitioned energy trajectories with REG-IQA. Study the corresponding multipolar electrostatics. - Use the developed methodology and acquired knowledge to obtain chemical insight in foldamers and, ambitiously, start guiding their synthetic design.- the approach that will be taken to answer these questions (what the student will actually be doing); The student will benefit from the precise combination of three main methodologies: IQA, REG and FFLUX. The realism and sophistication following from this "cross-fertilising" combination will offer unprecedented insight into molecular balances. This work will thereby deliver the much needed computational counterpart to the literature mentioned above. The student will make efficient use of the computer programs but will need to write specific Python scripts to handle the wealth of data that the local computers will generate. He will also use the machine learning method Gaussian Process Regression to create models from which the atomic energies can be quickly calculated. As a further type of activity, the student will find a pattern between the 2PDM (the reference or "calibrator") and the 1PDM, which is the only computationally feasible approach to obtain IQA-compatible non-DFT electron correlation energies and thus dispersion energy. Finally, the student will carry out some programming in FORTRAN90, in order to modify DL-FFLUX so that it can handle IQA-based dispersion energies. - the novel engineering and/or physical sciences content of the research (the science that places it within EPSRC's remit). Overall the project fits under two sub-portfolios of the Theme Physical Sciences, namely "Computational and Theoretical", and "Condensed Matter: Electronic Structure" with an ultimate connection to Supramolecular Chemistry. This project also resorts under the Chemical Sciences Grand Challenge of Directed Assembly of Extended Structures with Targeted Properties (DAESTP). Finally, there is a strong Machine Learning component to this project, and thus overlap with Artificial Intelligence.

- 该项目试图解决的研究问题/该项目的目标;分子平衡是相对较小的系统，旨在通过实验隔离给定类型的相互作用，以及它在多大程度上对整个系统的行为负责。虽然分子平衡的实验文献稳步增长，但其理论和计算对应物却严重不足。总的目标是从根本上改变这种不可接受的状况。更具体的目标是：-使用DFT和外部色散校正（D3，D4），将能量分配方法相互作用量子原子（IQA）应用于研究良好的命名平衡（例如Cockroft，Gung，Shimizu）。通过将两粒子密度矩阵（2 PDM）电子相关能与一粒子密度矩阵（1 PDM）电子相关能相联系，使非DFT后Hartree-Fock波函数能够并入色散能的IQA兼容评估中。应用内部方法相对能量梯度（REG），根据其在解释系统整体行为中的重要性对能量贡献进行排名。将内部力场FFLUX应用于选定的水溶液中的分子平衡，并使用REG-IQA监测分区能量轨迹。研究相应的多极静电场。- 使用开发的方法和获得的知识来获得折叠体的化学见解，并雄心勃勃地开始指导其合成设计。将采取的方法来回答这些问题（学生实际上会做什么）;学生将受益于三种主要方法的精确组合：IQA，REG和FFLUX。这种“交叉受精”组合带来的现实主义和复杂性将为分子平衡提供前所未有的见解。因此，这项工作将提供急需的计算对应上述文献。 学生将有效地利用计算机程序，但需要编写特定的Python脚本来处理本地计算机将生成的大量数据。他还将使用机器学习方法高斯过程回归来创建模型，从中可以快速计算原子能量。作为另一种类型的活动，学生将找到2 PDM（参考或“校准器”）和1 PDM之间的模式，这是唯一计算可行的方法来获得IQA兼容的非DFT电子相关能，从而色散能。最后，学生将在FORTRAN 90中进行一些编程，以修改DL-FFLUX，使其能够处理基于IQA的色散能。- 研究的新工程和/或物理科学内容（将其置于EPSRC职权范围内的科学）。总的来说，该项目适合主题物理科学的两个子组合，即“计算和理论”和“凝聚态物质：电子结构”，与超分子化学有最终的联系。该项目也属于化学科学大挑战，即定向组装具有目标性质的扩展结构（DAESTP）。最后，这个项目有一个强大的机器学习组件，因此与人工智能重叠。