From QTL to Gene for HDL Cholesterol

从 QTL 到 HDL 胆固醇基因

• 批准号: 7452498
• 负责人: Beverly J Paigen
• 金额: $ 40.06万
• 依托单位: JACKSON LABORATORY
• 依托单位国家: 美国
• 财政年份: 2004
• 资助国家: 美国
• 起止时间: 2004-07-01 至 2009-06-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7452498
• 关键词: Accounting; Affect; Alcohol consumption; Alleles; Atherosclerosis; Bioinformatics; Breeding; Candidate Disease Gene; Chromosomes, Human, Pair 18; Chromosomes, Human, Pair 2; Chromosomes, Human, Pair 3; Chromosomes, Human, Pair 8; Chromosomes, Human, Pair 9; Confidence Intervals; Congenic Strain; Data; Databases; Epidemiologic Studies; Estrogens; Genes; Genetic; Genetic Crosses; Genomics; Haplotypes; Heart Diseases; High Density Lipoprotein Cholesterol; High Density Lipoproteins; Human; Knock-out; Laboratories; Life Style; Literature; Maps; Measures; Methods; Moderate Exercise; Mouse Strains; Mus; Nicotinic Acids; Pharmaceutical Preparations; Population; Publishing; Quantitative Trait Loci; Recombinant Inbred Strain; Reporting; Research Personnel; Resources; Statistical Methods; Techniques; Technology; Testing; Therapeutic; Time; Transgenic Organisms; Variant; Work; congenic; data mining; gene interaction; genetic resource; insight; mouse genome; mouse model; therapeutic target

DESCRIPTION (provided by applicant): Epidemiological studies show that even small increases in high-density lipoprotein (HDL) cholesterol afford considerable protection against heart disease. Through quantitative trait locus (QTL) mapping in both mice and humans, many genomic regions have been found that contain genes affecting HDL levels. Combining data from our own laboratory with that from the literature shows that most HDL QTLs have been discovered many times, that the recently reported QTLs simply confirm previously reported ones, and that mouse and human QTLs are found in homologous chromosomal regions, suggesting that the same genes determine HDL in these species. We estimate that between 23 and 30 genes account for most population variation in HDL concentrations. Identifying these genes would increase our understanding of what factors cause an increase in HDL levels and may also provide therapeutic targets. Using mouse models, we aim to identify the genes underlying five HDL QTLs in the mouse chosen for further analysis because they are found in homologous regions of the human and mouse genomes; they have been found multiple times in different mouse crosses; and their effects are large enough to work with. For each QTL, we will test the hypothesis that increased HDL protects against atherosclerosis using congenic strains moving the allele causing increased HDL into the B6 genetic background. Using bioinformatics resources, we will narrow each QTL by combining statistical data from several crosses, comparing mouse and human homologies, applying haplotype analysis, and comparing sequence among mouse strains. Using genetic resources, we will further narrow each QTL with recombinant inbred strains, advanced intercross lines, and overlapping congenics. Candidate genes will be tested for expression and sequence differences; highly probable candidates will be proven by transgenic, knockout, and other technologies. Finally, we will build a public database of the raw QTL data that we and others have generated so that new techniques of analysis, such as determining the 95% confidence interval of a QTL, finding gene interactions, and analyzing combined cross data can be applied to published data.

描述（由申请人提供）：流行病学研究表明，即使是高密度脂蛋白（HDL）胆固醇的微小增加也能提供相当大的预防心脏病的保护。通过小鼠和人类的数量性状基因座（QTL）定位，已经发现许多基因组区域含有影响HDL水平的基因。结合我们自己实验室的数据和文献资料表明，大多数HDL QTL已经被发现了很多次，最近报道的QTL只是证实了以前报道的QTL，小鼠和人类的QTL被发现在同源染色体区域，这表明相同的基因决定HDL在这些物种。我们估计，23至30个基因之间占大多数人口的HDL浓度的变化。识别这些基因将增加我们对导致HDL水平升高的因素的理解，也可能提供治疗靶点。使用小鼠模型，我们的目标是识别小鼠中五个HDL QTL的相关基因，选择这些基因进行进一步分析，因为它们存在于人类和小鼠基因组的同源区域中;它们已在不同的小鼠杂交中多次被发现;它们的影响足够大，可以进行研究。对于每个QTL，我们将使用将导致HDL增加的等位基因移动到B6遗传背景中的同类菌株来检验增加的HDL保护免受动脉粥样硬化的假设。利用生物信息学资源，我们将通过结合几个杂交的统计数据，比较小鼠和人类的同源性，应用单倍型分析，以及比较小鼠品系之间的序列来缩小每个QTL。利用遗传资源，我们将进一步缩小每个QTL与重组自交系，先进的互交系，重叠同源。候选基因的表达和序列差异将被测试;极有可能的候选基因将通过转基因、敲除和其他技术来证明。最后，我们将建立一个我们和其他人已经产生的原始QTL数据的公共数据库，以便新的分析技术，如确定QTL的95%置信区间，发现基因相互作用，并分析组合的交叉数据可以应用于已发表的数据。

项目成果

Loss-of-function mutation in Pcsk1 increases serum APOA1 level and LCAT activity in mice.

• DOI: 10.1186/s42826-021-00111-2
• 发表时间: 2022-01-07
• 期刊: Laboratory animal research
• 影响因子: 2.9
• 作者: Khan AA;Kim N;Korstanje R;Choi S
• 通讯作者: Choi S

Farp2 and Stk25 are candidate genes for the HDL cholesterol locus on mouse chromosome 1.

• DOI: 10.1161/atvbaha.108.178384
• 发表时间: 2009-01
• 期刊: Arteriosclerosis, thrombosis, and vascular biology
• 作者: Su Z;Cox A;Shen Y;Stylianou IM;Paigen B
• 通讯作者: Paigen B

Genetic basis of HDL variation in 129/SvImJ and C57BL/6J mice: importance of testing candidate genes in targeted mutant mice.

129/SvImJ 和 C57BL/6J 小鼠 HDL 变异的遗传基础：在目标突变小鼠中测试候选基因的重要性。

• DOI: 10.1194/jlr.m800411-jlr200
• 发表时间: 2009
• 期刊: Journal of lipid research
• 影响因子: 6.5
• 作者: Su,Zhiguang;Wang,Xiaosong;Tsaih,Shirng-Wern;Zhang,Aihong;Cox,Allison;Sheehan,Susan;Paigen,Beverly
• 通讯作者: Paigen,Beverly