Heteronuclear Multi-dimensional In-Cell NMR Spectroscopy

异核多维细胞内核磁共振波谱

• 批准号: 7347353
• 负责人: LEONARD D SPICER
• 金额: $ 19.5万
• 依托单位: DUKE UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2007
• 资助国家: 美国
• 起止时间: 2007-12-01 至 2010-11-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7347353
• 关键词: 3-Dimensional; Area; Bacteria; Behavior; Biochemistry; Biological; Biological Models; Biological Process; Biomedical Research; Biopolymers; Cell Survival; Cells; Cellular biology; Chemicals; Compatible; Complex; Condition; Crowding; DNA-Protein Interaction; Data; Databases; Detection; Dimensions; Environment; Escherichia coli; Foundations; Generations; Heteronuclear NMR; In Vitro; Individual; Label; Life; Ligands; Magnetic Resonance Spectroscopy; Maps; Methods; Molecular; Monitor; NMR Spectroscopy; Personal Satisfaction; Pichia; Property; Proteins; Purpose; Range; Recombinant Proteins; Reporting; Resolution; Signal Transduction; Sodium Chloride; Spectrum Analysis; Stable Isotope Labeling; Structure; System; Systems Biology; Techniques; Technology; Time; Yeasts; base; data acquisition; design; in vivo; interest; isotope incorporation; macromolecule; molecular dynamics; molecular mass; new technology; protein expression; protein protein interaction; reconstitution; reconstruction; research study; self assembly; stable isotope; tool

DESCRIPTION (provided by applicant): Nuclear Magnetic Resonance Spectroscopy is one of the most selective methods for detailed characterization of molecular systems. Its importance in studies of biological macromolecules is well recognized particularly for structure determination and for probing molecular dynamics in purified or reconstituted systems. The use of NMR spectroscopy to characterize macromolecules in cellular environments, however, has been limited by sensitivity of detection and by the conventional approaches used for acquiring the heteronuclear multi- dimensional NMR data needed for detailed analysis. Fundamental questions regarding the properties of macromolecular components in the crowded and complex compartments contained in living cells are of prime importance to our understanding of biological function and the systems biology involved under normal and pathogenic conditions. This exploratory project is designed to exploit two new and promising NMR technologies along with advanced biosynthetic expression strategies for the purpose of overcoming past limitations and applying advanced NMR methods to study proteins and protein interactions directly in living cells and cellular environments. Cryogenically cooled probes in high field NMR spectrometers operating at 600, 800 and 900 MHz with both conventional and salt tolerant probe designs will be used to enhance the sensitivity of the experiment. Data will be acquired with reduced dimensionality experiments and analyzed by projection reconstruction methods to minimize the time needed for the multi-dimensional experiments. Fast NMR methods of this type are used to collect data on a timeframe compatible with cell viability. We envision direct observation of heteronuclear, multi-dimensional NMR spectra in living cells and their use in de novo assignment of protein resonances. These data provide the foundation for assessing global organization of proteins and monitoring protein-protein, protein-ligand, and protein-DNA interactions in vivo. The primary aim of this project is to develop powerful magnetic resonance spectroscopy (NMR) methods to characterize proteins in living cells. Understanding the behavior of individual proteins in the complex and crowded environment of the cell is critical to studies of systems biology. New fast data acquisition methods along with new generation ultra sensitive NMR probes provide enabling technologies for this in-cell spectroscopy.

描述（由申请人提供）：核磁共振光谱是用于详细表征分子系统的最具选择性的方法之一。它在生物大分子研究中的重要性是众所周知的，特别是在纯化或重组系统中的结构测定和分子动力学探测。然而，使用核磁共振光谱法表征细胞环境中的大分子受到检测灵敏度和用于获取详细分析所需的异核多维核磁共振数据的传统方法的限制。关于活细胞中拥挤而复杂的隔室中大分子组分的性质的基本问题对于我们理解正常和致病条件下所涉及的生物功能和系统生物学至关重要。该探索性项目旨在利用两种新的和有前途的NMR技术，沿着先进的生物合成表达策略，以克服过去的局限性，并应用先进的NMR方法直接在活细胞和细胞环境中研究蛋白质和蛋白质相互作用。在600、800和900 MHz的高场NMR光谱仪中，将使用低温冷却探头，采用常规探头和耐盐探头设计，以提高实验的灵敏度。数据将通过降维实验获得，并通过投影重建方法进行分析，以最大限度地减少多维实验所需的时间。这种类型的快速NMR方法用于收集与细胞活力相容的时间范围内的数据。我们设想在活细胞中直接观察异质性，多维NMR谱及其在蛋白质共振从头分配中的应用。这些数据为评估蛋白质的整体组织和监测体内蛋白质-蛋白质、蛋白质-配体和蛋白质-DNA相互作用提供了基础。 该项目的主要目的是开发强大的磁共振光谱（NMR）方法来表征活细胞中的蛋白质。了解单个蛋白质在复杂拥挤的细胞环境中的行为对系统生物学的研究至关重要。新的快速数据采集方法沿着与新一代超灵敏NMR探针一起为这种单元内光谱学提供了使能技术。