UNDERSTANDING AND IMPROVING SMALL MOLECULE INHIBITORS OF PRION REPLICATION

了解和改进朊病毒复制的小分子抑制剂

• 批准号: 7447339
• 负责人: FRED E COHEN
• 金额: $ 20.82万
• 依托单位: UNIVERSITY OF CALIFORNIA, SAN FRANCISCO
• 依托单位国家: 美国
• 财政年份: 2007
• 资助国家: 美国
• 起止时间: 2007-06-15 至 2008-05-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7447339
• 关键词: Acridines; Binding; Biological Assay; Cells; Class; Complex; Computing Methodologies; Confocal Microscopy; Data; Diamines; Dominant-Negative Mutation; Generations; Heterocyclic Compounds; Hippocampus (Brain); Image; Label; Lead; Length; Libraries; Ligands; Modeling; Molecular; Molecular Mechanisms of Action; Molecular Probes; Molecular Target; Neuroblastoma; Neurons; Pharmaceutical Chemistry; Pliability; Positioning Attribute; PrPC Proteins; PrPSc Proteins; Prion Diseases; Prions; Protein Isoforms; Quinacrine; Range; Recycling; Research; Role; Series; Structure; Surface; System; Techniques; analog; base; bis-acridine; conformational conversion; crosslink; cytotoxicity; design; fluorophore; imaging probe; improved; in vivo; inhibitor/antagonist; mimetics; pyridine; receptor; small molecule; tool; trafficking

The prion diseases are characterized by aggregation of a mis-folded isoform of the prion protein, termed PrP (Sc). No treatment is available to halt progression of prion diseases, and as such, clinically viable therapies are being sought. Potent pyridine-based compounds have been designed to mimic dominant negative PrP and hence bind to auxiliary molecules involved in the conformational conversion of PrP(C) to PrP (Sc). These compounds have been shown to inhibit PrP (Sc) replication and have been analogued using SAR techniques. While the EC(50)s of the original lead compounds were in the 15-30 micromolar range, the most potent new analogues are active at 300 nanomolar concentrations. Independently, we have identified the acridine-based compound, quinacrine as a potent anti-prion agent in a cell-based assay of PrP(Sc) replication (EC(50)=300 nanomolar), and developed bis-quinacrine analogs that are even more potent (EC(50)=30 nanomolar). Given the improved activity of the bis- analogs, subsequent research efforts will focus on developing this class of compound. Refinement of bioactive pyridine- and bis-acridine-based analogs using synthetic libraries and computational methods could furnish potent non-toxic heterocyclic compounds that could be viable candidates for the treatment of prion disease. The cellular and molecular mechanism of action of the pyridine- and acridine-based compounds is being examined to better understand how these compounds reduce PrP(Sc) replication in a cell-based model of prion disease. The trafficking of PrP(C) and PrP(Sc) between cellular compartments will be determined using a neuronal imaging system employing confocal microscopy. Subsequently, fluorophore labeled pyridine- and acridine-based analogs will be introduced to the imaging system to determine if these compounds exert their effect on PrP(Sc) replication by interfering with the trafficking of the prion protein. Photoactivatable labeled analogs will be synthesized for receptor cross-linking studies. These probes will be used to identify the molecular targets of the heterocyclic-based compounds. Once the molecular targets have been isolated and characterized, the structural and functional information pertaining to the targets will be used for the structure-based design of potent and selective compounds, active against PrP(Sc) replication.

朊病毒疾病的特征是朊病毒蛋白的错误折叠异构体聚集，称为PrP （Sc）。目前尚无阻止朊病毒疾病进展的治疗方法，因此，正在寻求临床可行的治疗方法。有效的吡啶基化合物被设计成模拟显性负PrP，从而结合辅助分子参与PrP(C)到PrP（Sc）的构象转换。这些化合物已被证明可以抑制PrP （Sc）的复制，并已使用SAR技术进行了模拟。虽然原始先导化合物的EC(50)s在15-30微摩尔范围内，但最有效的新类似物在300纳摩尔浓度下具有活性。独立地，我们已经确定了吖啶基化合物，喹吖啶作为一个有效的抗朊病毒剂在细胞为基础的试验