COMPUTER SIMULATION OF THE INFLUENZA M2 CHANNEL

M2 流感通道的计算机模拟

• 批准号: 7723515
• 负责人: ANDREW POHORILLE
• 金额: $ 0.58万
• 依托单位: UNIVERSITY OF CALIFORNIA, SAN FRANCISCO
• 依托单位国家: 美国
• 财政年份: 2008
• 资助国家: 美国
• 起止时间: 2008-07-01 至 2009-06-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7723515
• 关键词: Alkalies; Amino Acid Sequence; Amino Acids; Cell Wall; Charge; Complex; Computer Retrieval of Information on Scientific Projects Database; Computer Simulation; Cysteine; Engineering; Exhibits; Funding; Gated Ion Channel; Gramicidin; Grant; Histidine; Hydrogen Bonding; Influenza; Institution; Ions; Lipid Bilayers; M2 protein; Modeling; Molecular; Mutagenesis; N-terminal; Organism; Peptides; Play; Process; Property; Proteins; Proton Pump; Protons; Publishing; Rate; Research; Research Personnel; Resources; Role; Scanning; Source; Specificity; Structure; Study models; Theoretical Studies; Thinking; Transmembrane Domain; Tryptophan; United States National Institutes of Health; Water; Work; alanylalanine; aspartyl-proline; base; hydronium ion; leucylarginine; leucylleucine; monomer; prolylleucine; protein transport; reconstitution; synthetic peptide; valylvaline; voltage

This subproject is one of many research subprojects utilizing the resources provided by a Center grant funded by NIH/NCRR. The subproject and investigator (PI) may have received primary funding from another NIH source, and thus could be represented in other CRISP entries. The institution listed is for the Center, which is not necessarily the institution for the investigator. The structural complexity of proteins that transport charge across cell walls in contemporary organisms makes it extremely difficult to dissect the molecular mechanisms of their action. It is therefore desirable to have a protein model which is small and has a well known structural motif, yet operates with the efficiency and control of more complex proteins. This has led to the study of the Influenza A M2 protein -- a small, homotetrameric, voltage-gated ion channel which self-assembles in lipid bilayers and transports protons with high efficiency and selectivity. Each monomer is built of 97 amino acids and contains a single transmembrane domain. Additionally, active channels have been reconstituted from a synthetic peptide containing only a subset of 25 amino acids, including the transmembrane region, with no loss in specificity or efficiency. The sequence of amino acids in the peptide is Ser-Ser-Asp-Pro-Leu- Val-Val-Ala-Ala-Ser-Ile-Ile-Gly-Ile-Leu-His-Leu-Ile-Leu-Trp-Ile-Leu-Asp-Arg-Leu. Compared with grimicidin A, perhaps the most extensively studied model of a proton channel, the rate of proton transport across the truncated M2 channel is over 1000-fold faster. This remarkable combination of simplicity and efficiency makes M2 not only an excellent model for understanding how simple peptides can achieve high efficiency of proton transport but also an attractive, potential target for re-engineering a simple proton pump. In line with experimental and theoretical studies of proton transport in gramicidin, it has been suggested that proton transport occurs via translocation along a transient chain of water molecules that span the pore of the channel. The channel is gated by four histidine residues which occlude the lumen. This mechanism of gating can explain why M2 is impermeable to alkali ions. However, understanding the complete process of proton conductance through the channel requires additional studies. Cysteine scanning mutagenesis has shown that replacement of the pore-lining residues results in a large perturbation of the properties of the channel, indicating that these residues are essential for channel efficiency. The identities of other residues play a smaller role. How the pore-lining residues influence proton transport is not known, as none of these residues is highly polar or capable of forming particularly strong hydrogen bonds with the hydronium ion. The M2 channel is pH gated. At basic and neutral pH, it appears to be closed. Below a pH of 5.5 (which is also the pKa of histidine), the channel opens and proton transport is observed. It has therefore been argued that four neutral histidine residues from the gate, and that opening the channel involves protonating one (or more of the histidine residues). Recent NMR work by Cross and co-workers has suggested that the tryptophan residues are close to the histidine residues, and might also participate in channel gating. They constructed a model structure based on these results (PDB designation 1NYJ). Additionally, their newer REDOR NMR results indicate that the actual gate might consist of two His-His+ hydrogen bonding pairs. Based on this result, they have argued that at neultral pH, two of the histidine residues are protonated, and that the gate opens when three (or four) histidines become protonated at lower pH. Recently, crystal structures of M2 in an open, but blocked, state and in a closed state were published by the De Grado lab, and an NMR structure in a closed state was published by Schnell and Chou. These structures are quite different from the 1NYJ model, and neither exhibit the interhelical hydrogen bonding between Histidine residues. In addition to the His and Trp residues that appear to form the gate of the channel, the new structures both have a narrowing formed by a ring of Val residues near the N-terminal end of the bundle. This is thought to form, at least in part, the selectivity filter; the narrowing of the channel in this region could explain why the channel can transport protons but not other cationic species.

这个子项目是众多研究子项目之一