STRUCTURAL ANALYSIS OF SULF2 PROCESSING OF EXTRACELLULAR HEPARAN SULFATE
STRUCTURAL ANALYSIS OF SULF2 PROCESSING OF EXTRACELLULAR HEPARAN SULFATE
批准号:
7955956
负责人:
JOSEPH ZAIA
金额:
$0.09万
依托单位国家:
美国
项目类别:
财政年份:
2009
资助国家:
美国
项目状态:
已结题
起止时间:
2009-06-01 至 2010-05-31
关键词:
AffectBiologyCell surfaceChromatographyComputer Retrieval of Information on Scientific Projects DatabaseDevelopmentDiseaseEnvironmentEnzymesExtracellular MatrixFamilyFibroblast Growth FactorFundingGlycosaminoglycansGrantGrowthGrowth FactorHeparinHeparin LyaseHeparitin SulfateHybridsInorganic SulfatesInstitutionIonsLiquid ChromatographyLocationMass Spectrum AnalysisMeasurementMedicineN DomainOligosaccharidesOrganPatternPolysaccharidesProcessProteoglycanResearchResearch PersonnelResolutionResourcesRoleSamplingSiteSourceStructureSystemTestingTissuesTransforming Growth FactorsUnited States National Institutes of HealthUnspecified or Sulfate Ion SulfatesVascular Endothelial Growth Factorsdimerextracellularpreferencestable isotopetandem mass spectrometry
中文摘要
点击翻译按钮获取中文摘要
英文摘要
This subproject is one of many research subprojects utilizing the
resources provided by a Center grant funded by NIH/NCRR. The subproject and
investigator (PI) may have received primary funding from another NIH source,
and thus could be represented in other CRISP entries. The institution listed is
for the Center, which is not necessarily the institution for the investigator.
The recently discovered Sulf2 enzyme acts to modify heparan sulfate (HS) associated with cell surface and extracellular matrix proteoglycans. This remodeling affects cellular recognition of growth factor families including transforming growth factors, vascular endothelial growth factors, and fibroblast growth factors. Detailed structural information on the HS domain context required for Sulf2 activity is lacking due to analytical challenges. Such information is essential to understanding the functional roles of Sulf2 enzymes as a function of tissue location and temporal changes in the growth environment (development and disease).
Zaia et al have developed a liquid chromatography-mass spectrometric (LC/MS) platform for analysis of heparin sulfates and other glycosaminoglycan classes. This platform includes hydrophilic interaction chromatography and high resolution electrospray mass spectrometry. A tetraplex glycan stable isotope tag is used to facilitate quantification of HS oligosaccharides. This platform is ideal for assessing the activity of Sulf2 enzymes.
Sulf2 activity will be tested versus HS derived from several organs available at the MSR. HS samples will be digested with Sulf2. Samples will then be partially depolymerized using heparin lyases so as to produce oligosaccharides ranging from dimers to decamers. The oligosaccharides will be derivatized using tetraplex glycan tags to facilitate quantification. The oligosaccharide compositions will be determined by high accuracy mass measurement using an LC-LTQ-Orbitrap MS system. Oligosaccharides observed to undergo changes in abundance will be analyzed using tandem mass spectrometry. The product ion pattern will be used to determine HS oligosaccharide structures. It is expected that accurate mass measurement will define the HS domain (N-sulfated, N-acetylated, or hybrid) from which the oligosaccharide derives. Changes in abundance will determine the overall domain preference of Sulf2 as a function of mammalian organ. Tandem MS will provide additional structural detail regarding the sites acted upon by Sulf2.
期刊论文(0)
专著(0)
科研奖励(0)
会议论文
Methods for measuring matrisome molecule similarity during disease processes
-
批准号:10582128
-
项目类别:
-
资助金额:$16.5万
-
财政年份:2022
-
负责人:JOSEPH ZAIA
-
依托单位:
Methods for measuring matrisome molecule similarity during disease processes
-
批准号:10580774
-
项目类别:
-
资助金额:$41.25万
-
财政年份:2022
-
负责人:JOSEPH ZAIA
-
依托单位:
Methods for measuring matrisome molecule similarity during disease processes
-
批准号:10330789
-
项目类别:
-
资助金额:$27.23万
-
财政年份:2022
-
负责人:JOSEPH ZAIA
-
依托单位:
Methods for determination of glycoprotein glycosylation similarities among disease states
-
批准号:10194553
-
项目类别:
-
资助金额:$42.08万
-
财政年份:2019
-
负责人:JOSEPH ZAIA
-
依托单位:
An open-source software suite for processing glycomics and glycoproteomics mass spectral data
-
批准号:9391486
-
项目类别:
-
资助金额:$41.5万
-
财政年份:2017
-
负责人:JOSEPH ZAIA
-
依托单位:
A Thermo-Fisher Scientific Q-Exactive HF Mass Spectrometry System
-
批准号:9075665
-
项目类别:
-
资助金额:$57.98万
-
财政年份:2016
-
负责人:JOSEPH ZAIA
-
依托单位:
Software for automated interpretation of heparan sulfate tandem mass spectra
-
批准号:9337106
-
项目类别:
-
资助金额:$11.61万
-
财政年份:2015
-
负责人:JOSEPH ZAIA
-
依托单位:
Software for automated interpretation of heparan sulfate tandem mass spectra
-
批准号:9144851
-
项目类别:
-
资助金额:$31.56万
-
财政年份:2015
-
负责人:JOSEPH ZAIA
-
依托单位:
Software for automated interpretation of heparan sulfate tandem mass spectra
-
批准号:8984998
-
项目类别:
-
资助金额:$32.97万
-
财政年份:2015
-
负责人:JOSEPH ZAIA
-
依托单位:
Quantitative profiling of glycosaminoglycans from breast tumor tissue arrays
-
批准号:9079438
-
项目类别:
-
资助金额:$24.92万
-
财政年份:2014
-
负责人:JOSEPH ZAIA
-
依托单位:
Quantitative profiling of glycosaminoglycans from breast tumor tissue arrays
-
批准号:8889224
-
项目类别:
-
资助金额:$24.92万
-
财政年份:2014
-
负责人:JOSEPH ZAIA
-
依托单位:
Quantitative profiling of glycosaminoglycans from breast tumor tissue arrays
-
批准号:8738123
-
项目类别:
-
资助金额:$21.36万
-
财政年份:2014
-
负责人:JOSEPH ZAIA
-
依托单位:
MASS SPECTROMETRY RESOURCE WEB SITE
-
批准号:8365522
-
项目类别:
-
资助金额:$0.31万
-
财政年份:2011
-
负责人:JOSEPH ZAIA
-
依托单位:
BIOINFORMATICS FOR GLYCOMICS CHALLENGE PROJECT FOR FIRST YEAR GRADUATE STUDENTS
-
批准号:8365571
-
项目类别:
-
资助金额:$0.92万
-
财政年份:2011
-
负责人:JOSEPH ZAIA
-
依托单位:
DIFFERENTIAL CHARACTERIZATION OF GLYCOSAMINOGLYCAN TANDEM MASS SPECTROMETRY DATA
-
批准号:8365498
-
项目类别:
-
资助金额:$2.77万
-
财政年份:2011
-
负责人:JOSEPH ZAIA
-
依托单位:
DEVELOPMENT OF BIOINFORMATICS FOR GLYCOMICS
-
批准号:8365535
-
项目类别:
-
资助金额:$6.15万
-
财政年份:2011
-
负责人:JOSEPH ZAIA
-
依托单位:
IMPROVED HILIC LC/MS ANALYSIS OF HEPARINOIDS USING A MAKEUP FLOW CHIP
-
批准号:8365549
-
项目类别:
-
资助金额:$2.62万
-
财政年份:2011
-
负责人:JOSEPH ZAIA
-
依托单位:
STRUCTURAL ANALYSIS OF SULF2 PROCESSING OF EXTRACELLULAR HEPARAN SULFATE
-
批准号:8365551
-
项目类别:
-
资助金额:$1.23万
-
财政年份:2011
-
负责人:JOSEPH ZAIA
-
依托单位:
ANALYSIS OF NITROUS ACID DEPOLYMERIZATION PRODUCTS OF GLYCOSAMINOGLYCANS
-
批准号:8365497
-
项目类别:
-
资助金额:$2.77万
-
财政年份:2011
-
负责人:JOSEPH ZAIA
-
依托单位:
N-GLYCOSYLATION SITES OF INFLUENZA A VIRUS HEMAGGLUTININ AND SURFACTANT PROTEIN
-
批准号:8365550
-
项目类别:
-
资助金额:$5.38万
-
财政年份:2011
-
负责人:JOSEPH ZAIA
-
依托单位:
国内基金
海外基金
Journal of Integrative Plant Biology
-
批准号:31024801
-
项目类别:专项基金项目
-
资助金额:24.0万元
-
批准年份:2010
-
负责人:贺萍
-
依托单位: