HIGH RESOLUTION 3-D RECONSTRUCTION OF VIRUSES USING SINGLE PARTICLE ELECTRON CR

使用单粒子电子 CR 进行病毒的高分辨率 3D 重建

• 批准号: 7956336
• 负责人: WEN JIANG
• 金额: $ 0.08万
• 依托单位: CARNEGIE-MELLON UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2009
• 资助国家: 美国
• 起止时间: 2009-08-01 至 2010-07-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7956336
• 关键词: 3-Dimensional; Bacteriophages; Biomedical Research; Capsid; Computer Retrieval of Information on Scientific Projects Database; Cryoelectron Microscopy; DNA Packaging; Development; Electrons; Encapsulated; Escherichia coli; Family; Funding; Genetic Materials; Genome; Grant; Health; High Performance Computing; Homologous Gene; Human; Image; Infection; Institution; Life Cycle Stages; Macromolecular Complexes; Nucleic Acids; Podoviridae; Prevention; Process; Proteins; Research; Research Personnel; Resolution; Resources; Source; Staging; Structure; Tail; Techniques; United States National Institutes of Health; Virion; Virus; Virus Diseases; computing resources; image processing; insight; nanometer; particle; reconstruction; three dimensional structure; treatment strategy; virus host interaction

This subproject is one of many research subprojects utilizing the resources provided by a Center grant funded by NIH/NCRR. The subproject and investigator (PI) may have received primary funding from another NIH source, and thus could be represented in other CRISP entries. The institution listed is for the Center, which is not necessarily the institution for the investigator. Viral infections have been and remain one of the major threats to human health. Viruses are large assemblies of proteins and nucleic acids that rely on infection of hosts to complete their life cycle and sustain their propagation. Many viruses consist of a highly symmetric icosahedral protein shell that encapsulates the genetic materials. Multiple processes, including capsid assembly, genome packaging, maturation and virus-host interaction, must occur for a virus to successfully complete its life cycle and cause severe, often fatal, damage to the host. High resolution 3-D structure of the virus particles, if available, will provide important insights to understanding of these processes and the development of effective prevention and treatment strategies. Cryo-electron microscopy (cryo-EM) is an emerging technique for structural determination of large macromolecular complexes and viruses. In recent years, there are significant progresses in cryo-EM and it is now becoming routine to solve the structure of a virus to sub-nanometer resolutions (6-10 ), and more recently to near atomic resolution (~4 ). However, the image processing and 3-D reconstruction of cryo-EM images are computational resource demanding. In this proposal, we apply for the computational resources to solve the structures of bacterial virus T7/T3 at their many stages of assembly and DNA packaging process, which is an active NIH-funded R01 project. T7 and T3, which are close homologues, are dsDNA phages in the Podoviridae family that have a short tail and infect E. coli.. In this project, we aim to characterize the mechanisms of T7/T3 capsid assembly, maturation and genome packaging using cryo-EM and 3-D reconstruction techniques. For each of the four major states of the phage life cycle, procapsid, capsid II, dsDNA partially packaged particles (ipDNA-capsid), and the final infectious particles, we will purify the particles, image the particles using cryo-EM, and solve the high resolution structure by image processing and 3-D reconstruction.

这个子项目是许多研究子项目中的一个 由NIH/NCRR资助的中心赠款提供的资源。子项目和 研究者（PI）可能从另一个NIH来源获得了主要资金， 因此可以在其他CRISP条目中表示。所列机构为 研究中心，而研究中心不一定是研究者所在的机构。 病毒感染一直是并且仍然是对人类健康的主要威胁之一。病毒是蛋白质和核酸的大型集合体，其依赖于宿主的感染来完成其生命周期并维持其繁殖。许多病毒由高度对称的二十面体蛋白质外壳组成，外壳包裹着遗传物质。病毒必须经历多个过程，包括衣壳组装、基因组包装、成熟和病毒-宿主相互作用，才能成功完成其生命周期，并对宿主造成严重的、通常是致命的损害。病毒颗粒的高分辨率三维结构，如果可用的话，将为理解这些过程和制定有效的预防和治疗策略提供重要的见解。冷冻电子显微镜（cryo-EM）是一种新兴的技术，用于大分子复合物和病毒的结构测定。近年来，在冷冻EM中有显著的进展，并且现在将病毒的结构解析到亚纳米分辨率（6-10）并且最近解析到近原子分辨率（~4）已经成为常规。然而，冷冻-EM图像的图像处理和3-D重建是计算资源要求高的。在这个提议中，我们申请计算资源来解决细菌病毒T7/T3在其组装和DNA包装过程的多个阶段的结构，这是一个积极的NIH资助的R 01项目。T7和T3是短尾短尾病毒科中的dsDNA双链病毒，它们的同源性很高，能感染大肠杆菌。coli..在这个项目中，我们的目标是利用冷冻电镜和三维重建技术来表征T7/T3衣壳组装、成熟和基因组包装的机制。对于噬菌体生命周期的四个主要状态中的每一个，原衣壳，衣壳II，dsDNA部分包装颗粒（ipDNA衣壳），以及最终的感染性颗粒，我们将纯化颗粒，使用cryo-EM对颗粒进行成像，并通过图像处理和3-D重建来解决高分辨率结构。