DIET AND GENOTYPE IN PRIMATE ATHEROSCLEROSIS: DATA MANAGEMENT AND COMPUTING

灵长类动脉粥样硬化的饮食和基因型：数据管理和计算

• 批准号: 8172673
• 负责人: Michael Charles Mahaney
• 金额: $ 10.45万
• 依托单位: TEXAS BIOMEDICAL RESEARCH INSTITUTE
• 依托单位国家: 美国
• 财政年份: 2010
• 资助国家: 美国
• 起止时间: 2010-05-01 至 2011-04-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8172673
• 关键词: Animals; Arts; Atherosclerosis; Communication; Computer Retrieval of Information on Scientific Projects Database; Computer Security; Computer Systems; Computer software; Computers; Data; Data Base Management; Data Quality; Diet; Ensure; Funding; Gene Expression; Genes; Genotype; Grant; Information Systems; Institution; Laboratories; Modeling; Papio; Primates; Process; Quality Control; Research; Research Personnel; Research Project Grants; Resources; Risk Factors; Security; Services; Source; System; United States National Institutes of Health; Variant; base; computerized; computerized data processing; data management; gene function; genetic analysis; genetic pedigree; programs

This subproject is one of many research subprojects utilizing the resources provided by a Center grant funded by NIH/NCRR. The subproject and investigator (PI) may have received primary funding from another NIH source, and thus could be represented in other CRISP entries. The institution listed is for the Center, which is not necessarily the institution for the investigator. The Data Management and Computing Core (CORE UNIT B) 1) will provide database management services to the projects which will be generating and analyzing phenotypic, genotypic, and gene expression data within the Program Project and 2) will also provide high-throughput analytical computational support to the research efforts proposed. Core B will ensure data quality control, support applications oftware, provide network and systems management for computers used in this Program Project, and protect the security of project data. Specific aims of this core during the proposed grant period are 1) to assist, facilitate, and validate -- based on pedigree relationships -- the selection of specific animals for the proposed research projects; 2) to manage acquisition, entry, and control of computerized data used in this Program Project; 3) to manage inter-laboratory file transfer; 4) to process laboratory data and maintain the software used for processing; 5) to control the quality of the data collected; 6) to transform raw data into forms suitable for genetic analysis; 7) to protect the security/integrity of collected data; 8) to further develop and enhance software used in this Program Project as needed; 9) to undertake systems programming tasks as needed to maintain the computer system and its communications network; 10) to provide backup for data and systems files; 11) to protect the security of the computers used in this Program Project; and 12) to provide state-of-the-art computational support for the high-throughput analyses required in the four associated scientific projects. The four proposed research projects supported by this Core Unit represent the natural extension of more than two decades of research with the pedigreed baboon model. In addition to the management and processing of the data collected during the proposed funding period, Core B is also an important source of continuity between past efforts to establish, manage, and characterize the large baboon pedigrees, and detect and localize genes responsible for variation in atherosclerosis risk factors. The proposed efforts of Core B will contribute to identification and analysis of function of genes with data obtained from baboons from these same extended pedigrees.

这个子项目是许多研究子项目中利用 资源由NIH/NCRR资助的中心拨款提供。子项目和 调查员(PI)可能从NIH的另一个来源获得了主要资金， 并因此可以在其他清晰的条目中表示。列出的机构是 该中心不一定是调查人员的机构。 数据管理和计算核心(核心单位B)1)将为项目提供数据库管理服务，这些项目将在方案项目内生成和分析表型、基因和基因表达数据；2)还将为拟议的研究工作提供高通量分析计算支持。核心B将确保数据质量控制，支持应用软件，为本项目使用的计算机提供网络和系统管理，并保护项目数据的安全。 在拟议的资助期内，这一核心的具体目标是：1)协助、促进和验证--基于谱系关系--为拟议的研究项目选择特定的动物；2)管理本计划项目中使用的计算机化数据的获取、录入和控制；3)管理实验室间的文件传输；4)处理实验室数据并维护用于处理的软件；5)控制收集的数据的质量；6)将原始数据转换为适合于遗传分析的形式；7)保护收集的数据的安全性/完整性；8)根据需要进一步开发和增强本计划项目中使用的软件；9)根据需要承担维护计算机系统及其通信网络所需的系统编程任务；10)为数据和系统文件提供备份；11)保护本计划项目中使用的计算机的安全；以及12)为四个相关科学项目所需的高通量分析提供最先进的计算支持。 这一核心单位支持的四个拟议研究项目代表了二十多年来对纯种狒狒模式研究的自然延伸。除了管理和处理在拟议资助期间收集的数据外，核心B也是过去努力建立、管理和确定大型狒狒家系的特征，以及检测和定位导致动脉粥样硬化风险因素变异的基因的重要来源。核心B的拟议工作将有助于利用从这些扩展家系中的狒狒获得的数据来识别和分析基因的功能。